ortho2tree data resources
-
1.
European Bioinformatics Institute
- 2. University of Virginia School of Medicine
Description
Data resources for the 'ortho2tree' analysis described in the manuscript "Improved selection of canonical proteins for reference proteomes" of eight QfO (Quest for Orthologs) mammal proteomes, based on UniProtKB data (release UP2022_05).
The file qfomam.tar.gz is the archive required to re-run the analysis
Code and instructions are available at: https://github.com/g-insana/ortho2tree
The file qfomam_pdf_data.tar.gz contains all the pdf files generated as results, with tree and alignment for each of the orthogroups where canonicals were confirmed or changes were proposed.
A web interface for filtering and viewing the pdf files with the trees from the result of that analysis (and subsequent ones) is available at fasta.bioch.virginia.edu/ortho2tree
Files
Files
(682.2 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:e7a60b238d58e03887f1c125e26f2b2c
|
78.2 MB | Download |
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md5:8fc691ac54fefbcf05ddecbdad65004a
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603.9 MB | Download |
Additional details
Related works
- Has part
- Software: 10.5281/zenodo.11113231 (DOI)
- Is identical to
- Dataset: 10.6084/m9.figshare.25336213.v1 (DOI)
- Dataset: 10.6084/m9.figshare.25336216.v1 (DOI)
Software
- Repository URL
- https://github.com/g-insana/ortho2tree
- Programming language
- Python
- Development Status
- Active