Published February 26, 2024
| Version v1
Dataset
Open
Statistical analysis of data determining minimal selective concentration of Amoxicillin, doxycycline and enrofloxacin
Description
This repository is containing the datasets with statistical analysis of the paper: "Selection for amoxicillin, doxycycline and enrofloxacin resistant Escherichia coli at concentrations lower tha nthe ECOFF in rich media and in broiler-derived fecal fermenations."
The phenotypic analysis
- Phenotypic amoxicillin
- R-file: Phenotypic Amox mixed models, CSV-file: Phenotypic data Amox
- Phenotypic doxycycline
- R-file: Phenotypic Dox mixed models, CSV-file: Phenotypic data Dox
- Phenotypic enrofloxacin
- R-file: Phenotypic Enro mixed models, CSV-file: Phenotypic data Enro
The resistome analysis
- two CSV-files: Resistoom workfile and resistome_reference_file
- one R-file: Resistome_analysis_antimicrobial_classes
Microbiome analysis
- Alpha- and beta-diversity analysis
- R-file Biom analysis, CSV-file: metadata2, biom-file: reads_fermentation
- Microbial abundance analysis
- R-file: Abundance plot, CSV-file: metadata2. biom-file: reads_fermentation2.biom
Files
metadata2.csv
Files
(42.1 MB)
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