Published February 23, 2024
| Version 1.0
Dataset
Open
Data for "A hippocampus-accumbens code guides goal-directed appetitive behavior"
- 1. Leibniz-Institut für Neurobiologie Bibliothek
- 2. Deutsches Zentrum für Neurodegenerative Erkrankungen
- 1. Leibniz Institute for Neurobiology
Description
This dataset represents the source data for the manuscript "A hippocampus-accumbens code guides goal-directed appetitive behavior" by Barnstedt, Mocellin, and Remy. All files are saved as dataframes with pandas (v1.4.3, using 'blosc' compression for H5).
It contains the following files:
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ArchT.feather |
Dataframe containing all source behavioural data for mice expressing ArchT in NAc-projecting dHPC neurons. 10 mice in ArchT/EYFP groups are tested for 8 days on a head-fixed spatial reward learning task. 100 Hz temporal resolution. |
| behaviour.h5 | Dataframe containing all source behavioural data accompanying calcium imaging, collected from analogue signals and camera signals, downsampled to 15/30 Hz to match imaging temporal resolution. |
| C.h5 | Deconvolved calcium signals from 5372 dHPC pyramidal neurons recorded at 15/30 Hz in Thy1-GCaMP6s mice. Data collected with two-photon imaging and extracted using CaImAn. |
| ChR.feather | Dataframe containing all source behavioural data for mice expressing ChR2 in dHPC axons in NAc. 7 mice in ChR2/EYFP groups are tested over several days while naive and during a head-fixed spatial reward learning task. 75 Hz temporal resolution. |
| comps.feather | Dataframe containing one row per neuron, showing diverse neuronal features. |
| psth_ds.feather | Dataframe with peri-stimulus time histograms of calcium activity around lick onsets. |
| S.h5 | Deconvolved calcium events from 5372 dHPC pyramidal neurons recorded at 15/30 Hz in Thy1-GCaMP6s mice. Data collected with two-photon imaging and extracted using CaImAn. |
| success_comreward.feather | Dataframe showing successful behavioural trials with percentage of dHPC-/dHPC-->NAc neurons with place field centers near the reward zone. |
| training.feather | Dataframe containing all source behavioural data without calcium imaging, collected from analogue signals and camera signals, collected at 25/75 Hz from 18 mice. |
Files
Files
(957.5 MB)
| Name | Size | Download all |
|---|---|---|
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md5:34648ade2a449b5479fd1e3dc1d0d390
|
277.7 MB | Download |
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md5:f724305e90c78bd0b426718eef706f18
|
12.1 MB | Download |
|
md5:db113eb8b49e09fd4f4d80a6158fbbed
|
394.5 MB | Download |
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md5:b6abbdd061de1660d56949597ae86ca5
|
153.5 MB | Download |
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md5:fa3de8b1f720db4d574256aca549f031
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1.7 MB | Download |
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md5:05b02595f566075c29ca0cae893699f4
|
9.7 MB | Download |
|
md5:ae7b3577926e1fc7d298359cad2ea8f3
|
45.1 MB | Download |
|
md5:d01f9a1365d25d74dd5e3a3adeab5e94
|
4.0 kB | Download |
|
md5:af0ba3ff435a3f4ba497e3ab94d2b440
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63.2 MB | Download |
Additional details
Related works
- Is source of
- Preprint: 10.1101/2023.03.09.531869 (DOI)
Software
- Repository URL
- https://github.com/obarnstedt/dHPC-NAc
- Programming language
- Jupyter Notebook, Python
- Development Status
- Inactive