Published October 4, 2024
| Version v4
Dataset
Open
Organelle Genome Utilities benchmark data
Authors/Creators
Description
test_Lamiaceae.zip: Benchmark result of Lamiaceae plastid data. Includes original sequences and analyze result from OGU.
test_1M_out.zip: Benchmark result of 1 million random GenBank records. Includes original sequences and analyze result from OGU.
test_308_angiosperm.zip: Benchmark result of 308 angiosperm family's plastid genomes. Includes original sequences and analyze result from OGU.
test_rodents.zip: Benchmark result of 307 mitochondria genomes from rodents. Includes original sequences and analyze result from OGU.
CDS and spacer tree of angiosperm plastid data.zip: Sequences and maximum likelihood trees of angiosperm plastid CDS and spacers. Built with IQTREE2.
OGU-source code.zip: three versions of source code of OGU.
Files
CDS and spacer tree of angiosperm plastid data.zip
Files
(4.4 GB)
| Name | Size | Download all |
|---|---|---|
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md5:8c8933b49988532a57f33d9df07dd037
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19.6 MB | Preview Download |
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md5:155a62ce8b1c12d927025a38ca30452f
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449.9 kB | Preview Download |
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md5:aa56bfe813275369637b9bcd34416075
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456.7 kB | Preview Download |
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md5:d472c0566c78fb8b8b4e50e8344571b9
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1.7 MB | Preview Download |
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md5:af76e40ca49951ee84fbbbe18c2ff48b
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310.3 kB | Preview Download |
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md5:b365baf405f5d75d1e24dbe8de4cb257
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3.9 GB | Preview Download |
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md5:77c1825b5e58dfd59c0e782f51a2f66b
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83.0 MB | Preview Download |
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md5:235a91d43ffd615e4b888b000b42b51d
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383.6 MB | Preview Download |
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md5:72de9172c2fa9af965ae8d481b680dde
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20.8 MB | Preview Download |
Additional details
Related works
- Is supplement to
- Dataset: https://github.com/wpwupingwp/ogu (URL)
Dates
- Created
-
2024-08-25
Software
- Repository URL
- https://github.com/wpwupingwp/ogu
- Programming language
- Python
- Development Status
- Active