Performance evaluation of BARtab Holze et al., 2023

Comparison of synthetic barcode extraction and quantification pipelines BARtab.

tool-comp-results.tar.gz:

Comparison of BARtab, pycashier and TimeMachine/Rewind on population-level data. 

Input data: https://figshare.com/articles/dataset/FateMap_Paper_datasets_3_Goyal_et_al_2021_Biorxiv_/22806494

tools-comp-sc-results.tar.gz:

Comparison of BARtab and FateMap/Rewind on single-cell level data.

Input data: fastq files from https://figshare.com/articles/dataset/FateMap_Paper_datasets_2_Goyal_et_al_2021_Biorxiv_/22802888?file=40535864 and barcode.tsv.gz files from GEO GSM7434409, GSM7434410, GSM7434411, GSM7434412.

Code for both analyses: https://github.com/DaneVass/bartools_manuscript_code/tree/main/tools-comparison