Custom scripts for "Translational regulation enhances distinction of cell types in the nervous system", published in eLife, 2024.

The raw sequence data were deposited in the National Center for Biotechnology Information (NCBI) databse with the project code (PRJNA992629).

We used riboscript.sh, poolA.csv (IP samples) and poolB.csv (whole head samples) to map ribosome footprints. For RNA-seq, rnascript.sh was used. Ribosome distribution was analyzed with fp_transcript_Input.sh (whole head samples) or fp_transcript_IP.sh (IP samples). The list of transcripts is in fp_transcript_all_gene.txt. P-site offset was set as in asites_Input.txt (whole head samples) or asites_IP.txt (IP samples).