Published February 7, 2024
| Version 0.1.0
Dataset
Open
Spotiflow - benchmarking datasets
Creators
- 1. École Polytechnique Fédérale de Lausanne
Description
Fluorescence spot detection datasets used in the paper "Spotiflow: accurate and efficient spot detection for imaging-based spatial transcriptomics with stereographic flow regression". Consists of seven different annotated datasets of synthetic (2), FISH (3) and live-cell imaging (2).
Files
spotiflow_datasets.zip
Files
(662.4 MB)
| Name | Size | Download all |
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md5:65bd395069aaa01ca7c77a92ba96a381
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662.4 MB | Preview Download |
Additional details
Related works
- Is published in
- Preprint: 10.1101/2024.02.01.578426 (DOI)
Software
- Repository URL
- https://github.com/weigertlab/spotiflow
- Programming language
- Python, C++
- Development Status
- Active
References
- Eichenberger, Bastian; Zhan, YinXiu (2020). Datasets. figshare. Dataset. https://doi.org/10.6084/m9.figshare.12958037.v1
- Zhang, M., Eichhorn, S.W., Zingg, B. et al. Spatially resolved cell atlas of the mouse primary motor cortex by MERFISH. Nature 598, 137–143 (2021).