BioExcel Webinar #75: VIAMD: A Software for Visual Analysis of Molecular Dynamics

The typical workflow in molecular dynamics (MD) analysis requires several separate tools, often resulting in a lack of synergy and interaction between the individual analysis steps. In this seminar, we will present VIAMD [1] (https://github.com/scanberg/viamd) , an application designed to address this issue by integrating a 3D visualization of molecular trajectories with flexible analysis components. VIAMD uses an interactive scripting interface, allowing for property definition and evaluation. The application provides context-aware suggestions and expression feedback through information and visualizations. The user-defined properties can be explored and analyzed through the various components. This enables correlation with spatial conformations, statistical analysis of distributions, and powerful aggregation of multidimensional properties such as spatial distribution functions. We would be happy to use data from the participants for the webinar, so contact us if you are willing to share your data with us.

[1] Skånberg et al., J. Chem. Inf. Model. 2023, 63, 23, 7382–7391 (2023)