Published February 6, 2024 | Version 0.1.0
Dataset Open

muBrain - a 3D volumetric reconstruction of the mid-fetal brain

Authors/Creators

Description

File descriptions

Volumes:

uBrain-volume.nii.gz microBrain template volume. A 3D reconstruction of the right hemisphere of a mid-fetal brain. Voxel size: 0.15mm.
uBrain-atlas-labels.nii.gz microBrain brain tissue labels. Brain tissue labels (n=20) for the microBrain volume.
brain-tissue-labels.txt LUT for brain tissue labels

Surfaces:

uBrain.R.outer.surf.gii outer (pial) cortical surface of the microBrain volume
uBrain.R.inner.surf.gii inner (white) cortical surface of the microBrain volume
uBrain.cortical-atlas.fetal36w-template.label.gii microBrain cortical atlas labels projected onto the 36w timepoint of the dHCP fetal surface template
cortical-labels.txt LUT for cortical atlas labels.

Microarray data:

uBrain-processed-lmd-data.csv LMD microarray data from the BrainSpan atlas aligned to the microBrain cortical labels. 

Files

brain-tissue-labels.txt

Files (362.1 MB)

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Additional details

Funding

National Health and Medical Research Council
An imaging-genomic approach to advance understanding of early cortical development and outcome after preterm birth 1194497

Software

Repository URL
https://garedaba.github.io/micro-brain/
Development Status
Wip

References

  • Ding, S.-L. et al. Cellular resolution anatomical and molecular atlases for prenatal human brains. J. Comp. Neurol. 530, 6–503 (2022).
  • Miller, J. A. et al. Transcriptional landscape of the prenatal human brain. Nature 508, 199–206 (2014).
  • https://www.brainspan.org/