Published February 18, 2024 | Version v2
Dataset Open

Curated catalogue for IRFundusSet (Integrated Retinal Fundus Set)

  • 1. ROR icon Tsinghua University
  • 2. ROR icon Tsinghua–Berkeley Shenzhen Institute
  • 3. Shenzhen Eye Hospital
  • 4. ROR icon Jinan University
  • 5. Shenzhen Eye Institute

Description

Integrated Retinal Fundus Set (IRFundusSet) is a dataset that consolidates and curates several public datasets to ease their use as a harmonized unit and to 
have a common definition of what is normal or healthy. 

Motivation: Existing retinal fundus public datasets do not follow a standard format or structure for organizing and archiving the datasets. Moreover, eyes/images marked as `not pathological` might represent healthy eyes or eyes with another pathology that is not relevant to the task or disease the dataset was created for. 

This dataset entails 

  • A Python module that that consolidates and harmonizes the public datasets and that can be used in a  data pipeline following the PyTorch style for Dataset objects. 
  • A curated catalogue in CSV format where images have been manually reviewed to determine if the image is of a healthy or pathological eye; a common definition for what is a healthy observation 

 

 

Files

irfundusset_master_catalogue__with-src-meta.csv

Files (27.0 MB)

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md5:c5ef4ebbbad71740c2b4bde0fb483098
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md5:c5ef4ebbbad71740c2b4bde0fb483098
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Additional details

Related works

Describes
Preprint: arXiv:2402.11488 (arXiv)

Software

Repository URL
https://github.com/bilha-analytics/IRFundusSet
Programming language
Python