Published 2024 | Version v2
Dataset Open

Identification of transcription factor co-binding patterns with non-negative matrix factorization

Authors/Creators

  • 1. Center for Molecular Medicine Norway
  • 2. European Molecular Biology Laboratory
  • 3. Imperial College London & MRC London Institute of Medical Sciences

Description

This repository contains pre-processed data required to reproduce the results of the paper "Identification of transcription factor co-binding patterns with non-negative matrix factorization". The repository with the code can be found here: https://bitbucket.org/CBGR/cobind_manuscript/src/master/. Data include transcription factor binding sites (TFBSs) for 7 species from UniBind 2021 database, joined motif collection from CIS-BP and JASPAR 2022 databases and corresponding physical protein-protein interaction (PPI) data from STRING database.

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