Summarizing post-processed data of exon targets in pediatric cancer

Supplementary docker image from the manuscript titled "Discovery of immunotherapy targets for pediatric solid and brain tumors by exon-level expression."

After downloading the file.

User can run the following command to load the docker image

docker load < CSEminer_3_figure_data_generation.tar

docker ps -l

docker run -it cseminer_example:version1 sh

This should prompt the user to be inside the docker environment

Next, run the following command

sh step2_run_code_v2.sh

exit

# Several output file will be generated

Next, run the following command to get a list of docker images and copy the output folder to your local system.

docker ps -l

# Look for container id

docker cp [CONTAINER ID]:/app/OutputFolder/ .

For example 

CONTAINER ID   IMAGE                                        COMMAND   CREATED         STATUS                     PORTS     NAMES

43e92d65f679   cseminer_example:version1   "sh"      9 minutes ago   Exited (0) 9 minutes ago             kind_wilson

docker cp 43e92d65f679:/app/OutputFolder/ .

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Additional source code can be found here.

Instructions on how the image was generated can be found here.