Supporting data for "Updated MS²PIP web server delivers fast and accurate MS² peak intensity prediction for multiple fragmentation methods, instruments and labeling techniques"

Data for doi:10.1093/nar/gkz299.

Notebooks and datasets to reproduce the figure:

- figures.zip

Datasets used for MS²PIP training and external evaluation:

- CID.zip
- HCD.zip
- iTRAQ.zip
- iTRAQphospho.zip
- TMT.zip
- TTOF5600.zip

Each dataset zip file contains combined MGF files and peptides lists in the MS²PIP .peprec
format. See https://github.com/compomics/ms2pip/tree/v20191029#peprec-file for more info on the
format.