Biodiversity Literature Repository

Submit to community
Liberated Data
Published December 31, 2018 | Version v1
Journal article Restricted

In silico characterization and transcriptional modulation of phenylalanine ammonia lyase (PAL) by abiotic stresses in the medicinal orchid Vanda coerulea Griff. ex Lindl.

Authors/Creators

Description

Nag, Swagata, Kumaria, Suman (2018): In silico characterization and transcriptional modulation of phenylalanine ammonia lyase (PAL) by abiotic stresses in the medicinal orchid Vanda coerulea Griff. ex Lindl. Phytochemistry 156: 176-183, DOI: 10.1016/j.phytochem.2018.09.012, URL: http://dx.doi.org/10.1016/j.phytochem.2018.09.012

Files

Restricted

The record is publicly accessible, but files are restricted to users with access.

Linked records

Additional details

Identifiers

LSID
urn:lsid:plazi.org:pub:FF97547A312BC058FB7AF05DFFA8FF8F

Has part
Figure: 10.5281/zenodo.10484478 (DOI)
Figure: 10.5281/zenodo.10484480 (DOI)
Figure: 10.5281/zenodo.10484482 (DOI)
Figure: 10.5281/zenodo.10484484 (DOI)
Figure: 10.5281/zenodo.10484486 (DOI)
Figure: 10.5281/zenodo.10484488 (DOI)
Figure: 10.5281/zenodo.10484490 (DOI)
Figure: 10.5281/zenodo.10484492 (DOI)
Figure: 10.5281/zenodo.10484494 (DOI)

References

  • Achnine, L., Blancaflor, E.B., Rasmussen, S., Dixon, R.A., 2004. Colocalization of L-phenylalanine ammonia-lyase and cinnamate 4-hydroxylase for metabolic channeling in phenylpropanoid biosynthesis. Plant Cell 16, 3098-3109.
  • Ainsworth, E.A., Gillespie, K.M., 2007. Estimation of total phenolic content and other oxidation substrates in plant tissues using Folin-Ciocalteu reagent. Nat. Protoc. 2, 875-877.
  • Appert, C., Logemann, E., Hahlbrock, K., Schmid, J., Amrhein, N., 1994. Structural and catalytic properties of the four phenylalanine ammonia-lyase isoenzymes from parsley (Petroselinum crispum Nym.). FEBS J. 225, 491-499.
  • Bourgaud, F., Gravot, A., Milesi, S., Gontier, E., 2001. Production of plant secondary metabolites: a historical perspective. Plant Sci. 161, 839-851.
  • Campos, R., Nonogaki, H., Suslow, T., Saltveit, M.E., 2004. Isolation and characterization of a wound inducible phenylalanine ammonia - lyase gene (LsPAL1) from Romaine lettuce leaves. Physiol. Plantarum 121, 429-438.
  • Chang, C.C., Yang, M.H., Wen, H.M., Chern, J.C., 2002. Estimation of total flavonoid content in propolis by two complementary colorimetric methods. J. Food Drug Anal. 10, 178-182.
  • Chavan, J.J., Jagtap, U.B., Gaikwad, N.B., Dixit, G.B., Bapat, V.A., 2013. Total phenolics, flavonoids and antioxidant activity of Saptarangi (Salacia chinensis L.) fruit pulp. J. Plant Biochem. Biotechnol. 22, 409-413.
  • Dixon, R.A., Paiva, N.L., 1995. Stress-induced phenylpropanoid metabolism. Plant Cell 7, 1085-1097.
  • Dixon, R.A., Achnine, L., Kota, P., Liu, C.J., Reddy, M.S., Wang, L., 2002. The phenylpropanoid pathway and plant defense - a genomics perspective. Mol. Plant Pathol. 3, 371-390.
  • Dubery, I.A., Schabort, C., 1986. The phenylalanine ammonia-lyase activity of developing orange fruit. Biochem. Int. 13, 579-589.
  • Gamborg, O.L., Miller, R., Ojima, K., 1968. Nutrient requirements of suspension cultures of soybean root cells. Exp. Cell Res. 50, 151-158.
  • Guex, N., Peitsch, M.C., 1997. SWISS-MODEL and the Swiss-Pdb Viewer: an environment for comparative protein modeling. Electrophoresis 18, 2714-2723.
  • Hahlbrock, K., Scheel, D., 1989. Physiology and molecular biology of phenylpropanoid metabolism. Annu. Rev. Plant Biol. 40, 347-369.
  • Jeong, M.J., Choi, B.S., Bae, D.W., Shin, S.C., Park, S.U., Lim, H.S., Kim, J., Kim, J.B., Cho, B.K., Bae, H., 2012. Differential expression of kenaf phenylalanine ammonia-lyase (PAL) ortholog during developmental stages and in response to abiotic stresses. Plant Omics 5, 392-399.
  • Jiang, Y., Xia, N., Li, X., Shen, W., Liang, L., Wang, C., Wang, R., Peng, F., Xia, B., 2011. Molecular cloning and characterization of a phenylalanine ammonia-lyase gene (LrPAL) from Lycoris radiata. Mol. Biol. Rep. 38, 1935-1940.
  • Jin, Q., Yao, Y., Cai, Y., Lin, Y., 2013. Molecular cloning and sequence analysis of a phenylalanine ammonia-lyase gene from Dendrobium. PloS One 8, e62352.
  • Kervinen, T., Peltonen, S., Utriainen, M., Kangasjarvi, J., Teeri, T.H., Karjalainen, R., 1997. Cloning and characterization of cDNA clones encoding phenylalanine ammonia-lyase in barley. Plant Sci. 123, 143-150.
  • Kovacik, J., Klejdus, B., 2012. Tissue and method specificities of phenylalanine ammonia-lyase assay. J. Plant Physiol. 169, 1317-1320.
  • Kong, J.Q., 2015. Phenylalanine ammonia-lyase, a key component used for phenylpropanoids production by metabolic engineering. RSC Adv. 5 (77), 62587-62603.
  • Laskowski, R.A., 2001. PDBsum: summaries and analyses of PDB structures. Nucleic Acids Res. 29, 221-222.
  • Lee, B.K., Park, M.R., Srinivas, B., Chun, J.C., Kwon, I.S., Chung, I.M., Yoo, N.H., Choi, K.G., Yun, S.J., 2003. Induction of phenylalanine ammonia-lyase gene expression by paraquat and stress-related hormones in Rehmannia glutinosa. Mol. Cell. 16, 34-39.
  • Liew, C.F., Goh, C.J., Loh, C.S., Lim, S.H., 1996. Cloning and nucleotide sequence of a cDNA encoding phenylalanine ammonia-lyase from Bromheadia finlaysoniana (Lindl.) Rchb. f. (accession no. X99997) (PGR 96-087). Plant Physiol. 112, 863.
  • Lois, R., Dietrich, A., Hahlbrock, K., Schulz, W., 1989. A phenylalanine ammonia-lyase gene from parsley: structure, regulation and identification of elicitor and light responsive cis-acting elements. EMBO J. 8, 1641-1648.
  • Lu, B.B., Du, Z., Ding, R.X., Zhang, L., Yu, X.J., Liu, C.H., Chen, W.S., 2006. Cloning and characterization of a differentially expressed phenylalanine ammonia lyase gene (IiPAL) after genome duplication from Tetraploid Isatis indigotica Fort. J. Integr. Plant Biol. 48, 1439-1449.
  • Ma, W., Wu, M., Wu, Y., Ren, Z., Zhong, Y., 2013. Cloning and characterization of a phenylalanine ammonia-lyase gene from Rhus chinensis. Plant Cell Rep. 32, 1179-1190.
  • Majumder, P., Laha, S., Datta, N., 1982. Coelonin, a 9,10-Dihydrophenanthrene from the orchids Coelogyne ochracea and Coelogyne elata. Phytochemistry 21, 47-48.
  • MacDonald, M.J., D'Cunha, G.B., 2007. A modern view of phenylalanine ammonia lyase. Biochem. Cell Biol. 85, 273-282.
  • Medhi, R.P., Chakrabarti, S., 2009. Traditional knowledge of NE people on conservation of wild orchids. Indian J. Trad. Know. 8, 11-16.
  • Minami, E., Ozeki, Y., Matsuoka, M., Koiruka, N., Tanaka, Y., 1989. Structure and some characterization of the gene for phenylalanine ammonia-lyase from rice plants. Eur. J. Biochem. 185, 19-25.
  • Mohammadkhani, N., Heidari, R., Abbaspour, N., Rahmani, F., 2016. Salinity effects on expression of some important genes in sensitive and tolerant grape genotypes. Turk. J. Biol. 40, 95-108.
  • Okada, T., Mikage, M., Sekita, S., 2008. Molecular characterization of the phenylalanine ammonia-lyase from Ephedra sinica. Biol. Pharm. Bull. 31, 2194-2199.
  • Priya, R.S., Kumar, S., Britto, J., 2011. Antibacterial screening of the leaf extracts of Vanda coerulea Griff. ex Lindl. Int. J. Res. Pharm. Sci. 2, 60-62.
  • Rasmussen, S., Dixon, R.A., 1999. Transgene-mediated and elicitor-induced perturbation of metabolic channelling at the entry point into the phenylpropanoid pathway. Plant Cell 11, 1537-1551.
  • Ritter, H., Schulz, G.E., 2004. Structural basis for the entrance into the phenylpropanoid metabolism catalyzed by phenylalanine ammonia-lyase. Plant Cell 16, 3426-3436.
  • Sarma, A.D., Sharma, R., 1999. Purification and characterization of UV-B induced phenylalanine ammonia-lyase from rice seeding. Phytochemistry 50, 729-737.
  • Simmler, C., Antheaume, C., Lobstein, A., 2010. Antioxidant biomarkers from Vanda coerulea stems reduces irradiated HaCaT PGE-2 production as a result of COX-2 inhibition. PloS One 5, e13713.
  • Song, J., Wang, Z., 2009. Molecular cloning, expression and characterization of a phenylalanine ammonia-lyase gene (SmPAL1) from Salvia miltiorrhiza. Mol. Biol. Rep. 36, 939.
  • Su, V., Hsu, B.D., 2003. Isolation and sequencing a genomic DNA encoding for phenylalanine ammonia-lyase from Phalaenopsis. DNA Seq. 14, 442-449.
  • Tamura, K., Stecher, G., Peterson, D., Filipski, A., Kumar, S., 2013. MEGA 6: molecular evolutionary genetics analysis version 6.0. Mol. Biol. Evol. 30, 2725-2729.
  • Valifard, M., Mohsenzadeh, S., Niazi, A., Moghadam, A., 2015. Phenylalanine ammonia lyase isolation and functional analysis of phenylpropanoid pathway under salinity stress in Salvia species. Aust. J. Crop. Sci. 9, 656-665.
  • Wang, X.H., Gong, M., Tang, L., Zheng, S., Lou, J.D., Ou, L., Zhang, C., 2013. Cloning, bioinformatics and the enzyme activity analyses of a phenylalanine ammonia-lyase gene involved in dragon's blood biosynthesis in Dracaena cambodiana. Mol. Biol. Rep. 40, 97-107.
  • Xu, F., Cai, R., Cheng, S., Du, H., Wang, Y., Cheng, S., 2008. Molecular cloning, characterization and expression of phenylalanine ammonia-lyase gene from Ginkgo biloba. Afr. J. Biotechnol. 7, 721-729.
  • Xu, H., Park, N.I., Li, X., Kim, Y.K., Lee, S.Y., Park, S.U., 2010. Molecular cloning and characterization of phenylalanine ammonia-lyase, cinnamate 4-hydroxylase and genes involved in flavone biosynthesis in Scutellaria baicalensis. Bioresour. Technol. 101, 9715-9722.
  • Xu, F., Deng, G., Cheng, S., Zhang, W., Huang, X., Li, L., Li, J., 2012. Molecular cloning, characterization and expression of the phenylalanine ammonia-lyase gene from Juglans regia. Molecules 17, 7810-7823.
  • Zlotek, U., Mikulska, S., Nagajek, M., Swieca, M., 2016. The effect of different solvents and number of extraction steps on the polyphenol content and antioxidant capacity of basil leaves (Ocimum basilicum L.) extracts. Saudi J. Biol. Sci. 23, 628-633.