Published December 31, 2019
| Version v1
Journal article
Restricted
Genetic, morphological and chemical investigations reveal the genetic origin of Pompia (C. medica tuberosa Risso & Poiteau) - An old endemic Sardinian citrus fruit
Authors/Creators
- 1. ∗ & UMR AGAP INRA Corse, 20230, San Giuliano, France
Description
Luro, François, Viglietti, Grazia, Marchi, Elodie, Costantino, Gilles, Scarpa, Grazia Maria, Tomi, Felix, Paoli, Mathieu, Curk, Franck, Ollitrault, Patrick (2019): Genetic, morphological and chemical investigations reveal the genetic origin of Pompia (C. medica tuberosa Risso & Poiteau) - An old endemic Sardinian citrus fruit. Phytochemistry 168: 1-10, DOI: 10.1016/j.phytochem.2019.112083, URL: http://dx.doi.org/10.1016/j.phytochem.2019.112083
Files
Linked records
Additional details
Identifiers
- LSID
- urn:lsid:plazi.org:pub:F907B46AA47EFF96FF9EFFA64C24FFDD
References
- Adams, 2007. Identification of Essential Oil Components by Gas Chromatography/Mass Spectrometry. In: 4th ed. Allured Publ. Corp., Carol Stream.
- Ahmed, D., Comte, A., Curk, F., Costantino, G., Luro, F., Dereeper, A., Mournet, P., Froelicher, Y., Ollitrault, P., 2019. Genotyping by sequencing can reveal the complex mosaic genomes in gene pools resulting from reticulate evolution; a case study in diploid and polyploid citrus. Ann. Bot. https://doi.org/10.1093/aob/mcz029.
- Barkley, N.A., Roose, M.L., Krueger, R.R., Federici, C.T., 2006. Assessing genetic diversity and population structure in a citrus germplasm collection utilizing simple sequence repeat markers (SSRs). Theor. Appl. Genet. 112, 1519-1531.
- Biswas, M.K., Chai, L., Mayer, C., Xu, Q., Guo, W., Deng, X., 2012. Exploiting BAC-end sequences for the mining, characterization and utility of new short sequences repeat (SSR) markers in Citrus. Mol. Biol. Rep. 39, 5373-5386.
- Bryan, G.J., McNicoll, J., Ramsay, G., Meyer, R.C., De Jong, W.S., 1999. Polymorphic simple sequence repeat markers in chloroplast genomes of Solanaceous plants. Theor. Appl. Genet. 99, 859-867.
- Calabrese, F., 1990. La favolosa storia degli agrumi. Agricoltura 208, 83-128.
- Camarda, I., Mazzola, P., Brunu, A., Fenu, G., Lombardo, G., Palla, F., 2013. Un agrume nella storia della Sardegna: Citrus limon var. Pompia Camarda var. Nova. Quad. Bot. Amb. Appl. 24, 109-118.
- Chessa, I., Mulas, M., Pala, M., 1994. Gli agrumi. In: Agabbio, M. (Ed.), Patrimonio Genetico di Vecchie Specie Arboree da Frutto: Le vecchie varieta della Sardegna Carlo Delfino Editore, pp. 339-360 Sassari.
- Cheng, Y., de Vicente, M.C., Meng, H., Guo, W., Tao, N., Deng, X., 2005. A set of primers for analyzing chloroplast DNA diversity in Citrus and related genera. Tree Physiol. 25, 661-672.
- Curk, F., Ollitrault, F., Garcia-Lor, A., Luro, F., Navarro, L., Ollitrault, P., 2016. Phylogenetic origin of limes and lemons revealed by cytoplasmic and nuclear markers. Ann. Bot. 117, 565-583. https://doi.org/10.1093/aob/mcw005.
- D'Aquino, S., Fronteddu, F., Usai, M., Palma, A., 2005. Qualitative and physiological properties of 'Pompia', a citron-like fruit. Plant Genet. Resour. Newsl. 143, 40-45.
- Davies, 1990. Gas chromatographic retention indices of monoterpenes and sesquiterpenes on methyl silicone and Carbowax 20M phases. J. Chromatogr. 503, 1-24.
- Falush, D., Stephens, M., Pritchard, J.K., 2003. Inference of population structure using Multilocus genotype data: linked loci and correlated allele frequencies. Genetics 164, 1567-1587.
- Fancello, et al., 2016. Chemical characterization, antioxidant capacity and antimicrobial activity against food related microorganisms of Citrus limon var. pompia leaf essential oil. Food Sci. Technol. 69, 579-585.
- Fanciullino, A.L., Tomi, F., Luro, F., Desjobert, J.M., Casanova, J., 2006. Chemical variability of peel and leaf oils of mandarins. Flavour Fragrance J. 21, 359-367.
- Fenu, G., Carai, A., Foddai, M., Azara, E., Careddu, S., Usai, M., 2010. Composition and seasonal variation of Citrus monstruosa essential oil from Sardinia. Int. J. Essent. Oil Therap. 4, 23-25.
- Flamini, G., Pistelli, L., Nardoni, S., Ebani, V.V., Zinnai, A., Mancianti, F., Ascrizzi, R., Pistelli, L., 2019. Essential oil composition and biological activity of "Pompia", a Sardinian citrus ecotype. Molecules 24, 908. https://doi.org/10.3390/ molecules24050908.
- Froelicher, Y., Mouhaya, W., Bassene, J.B., Costantino, G., Kamiri, M., Luro, F., Morillon, R., Ollitrault, P., 2011. New universal mitochondrial PCR markers reveal new information on maternal citrus phylogeny. Tree Genet. Genomes 7, 49-61.
- Gallesio, G., 1811. Traite du Citrus. Louis Fantin, Paris.
- Garcia-Lor, A., Luro, F., Navarro, L., Ollitrault, P., 2012. Comparative use of InDel and SSR markers in deciphering the interspecific structure of cultivated citrus genetic diversity: a perspective for genetic association studies. Mol. Genet. Genom. 287, 77-94. https://doi.org/10.1007//s00438-011-0658-4.
- Guney, M., Oz, A.T., Kafkas, E., 2015. Comparison of lipids, fatty acids and volatile compounds of various kumquat species using HS/GC/MS/FID techniques. J. Sci. Food Agric. 95, 1268-1273.
- Jimenez-Cuesta, M.J., Cuquerella, J., Martinez-Javega, J.M., 1981. Determination of a color index for citrus fruit degreening. Proc. of the International Society of Citriculture 2, 750-753.
- Joulain, Konig, 1998. The Atlas of Spectral Data of Sesquiterpene Hydrocarbons. Verlag, Hamburg.
- Kepiro, J.L., Roose, M.L., 2007. Nucellar embryony. In: Khan, I. (Ed.), Citrus Genetics, Breeding and Biotechnology. CABI publishing, Londres, pp. 141-150.
- Kijas, J.M.H., Thomas, M.R., Fowler, J.C.S., Roose, M.L., 1997. Integration of trinucleotide microsatellites into a linkage map of Citrus. Theor. Appl. Genet. 94, 701-706.
- Konig, Hochmuth, Joulain, 2001. Terpenoids and Related Constituents of Essential Oils. Library of MassFinder 2.1. University of Hamburg, Institute of Organic Chemistry, Hamburg.
- Liu, C., Jiang, D., Cheng, Y., Deng, X., Chen, F., Fang, L., Ma, Z., Xu, J., 2013a. Chemotaxonomic study of Citrus, Poncirus and Fortunella genotypes based on peel oil volatile compounds - deciphering the genetic origin of Mangshanyegan (Citrus nobilis Lauriro). PLoS One 8, e58411.
- Liu, S.R., Li, W.Y., Long, D., Hu, C.G., Zhang, J.Z., 2013b. Development and characterization of genomic and expressed SSRs in citrus by genome-wide analysis. PLoS One 8, e75149.
- Lota, M.L., De Rocca Serra, D., Tomi, F., Casanova, J., 2000. Chemical variability of peel and leaf essential oils of 15 species of mandarins. Biochem. Syst. Ecol. 28, 61-78.
- Lota, M.L., De Rocca Serra, D., Tomi, F., Casanova, J., 2001. Chemical variability of peel and leaf essential oils of 15 species of mandarins. Biochem. Syst. Ecol. 29, 77-104.
- Lota, M.L., de Rocca Serra, D., Tomi, F., Bessiere, J.M., Casanova, J., 1999. Chemical composition of peel and leaf essential oils of Citrus medica L. and C. limonimedica Lush. Flavour Fragrance J. 14, 161-166.
- Lota, M.L., de Rocca Serra, D., Tomi, F., Jacquemond, C., Casanova, J., 2002. Volatile components of peel and leaf oils of lemon and lime species. J. Agric. Food Chem. 50, 796-805.
- Luro, F., Costantino, G., Terol, J., Argout, X., Allario, T., Wincker, P., Talon, M., Ollitraul, t P., Morillon, R., 2008. Transferability of the EST-SSRs developed on Nules clementine (Citrus clementina Hort ex Tan) to other Citrus species and their effectiveness for genetic mapping. BMC Genomics 9, 287.
- Luro, F., Rist, D., Ollitrault, P., 2000. Evaluation of genetic relationships in Citrus genus by means of sequence tagged microsatellites. In: International Symposium on Molecular Markers for Characterizing Genotypes and Identifying Cultivars in Horticulture. Acta Horticulturae, vol. 546. pp. 237-242.
- Luro, F., Venturini, N., Costantino, G., Paolini, J., Ollitrault, P., Costa, J., 2012. Genetic and chemical diversity of citron (Citrus medica L.) based on nuclear and cytoplasmic markers and leaf essential oil composition. Phytochemistry 77, 186-196.
- Luro, F., Bloquel, E., Tomu, B., Costantino, G., Tur, I., Riolacci, S., Varamo, F., Ollitrault, P., Froelicher, Y., Curk, F., Pailly, O., 2018. The INRA-CIRAD citrus germplasm collection of San Giuliano, Corsica in AGRUMED: archaeology and history of citrus fruit. In: Veronique, Zech-Matterne, Girolamo, Fiorentino (Eds.), The Mediterranean: Acclimatization, Diversifications, Uses. Publications du Centre Jean Berard, Naples, pp. 243-261.
- Luro, F., Laigret, F., Ollitrault, P., Bove, J.M., 1995. DNA amplified fingerprinting (D.A.F.), an useful tool for determination of genetic origin and diversity analysis in Citrus. Hortic. Sci. (Stuttg.) 30, 1063-1067.
- Manca Dell'Arca, A., 1780. Agricoltura in Sardegna. Orsino, Napoli.
- Mignani, I., Mulas, M., Mantegazza, R., Lovigu, N., Spada, A., Nicolosi, E., Bassi, D., 2004. Caratterizzazione morfologica, biochimica e molecolare di accessioni di "Pompia", agrume della Sardegna. In: Atti Delle VII Giornate Scientifiche SOI, Castel dell'Ovo, Napoli).
- Mignani, I., Mulas, M., Mantegazza, M., Lovigu, N., Spada, A., Nicolosi, E., Bassi, D., 2015. Characterization by molecular markers of "Pompia" a natural Citrus hybrid cultivated in Sardinia. Acta Hortic. (Wagening.) 1065, 165-172.
- Moris, G.G., 1837. Flora Sardoa. Tip. Regia, Torino.
- National Institute of Standards and Technology, 1999. PC version 1.7 of the NIST/EPA/ NIH Mass Spectral Database. Perkin-Elmer Corp., Norwalk.
- Nicolosi, E., Deng, Z.N., Gentile, A., La Malfa, S., Continella, G., Tribulato, E., 2000. Citrus phylogeny and genetic origin of important species as investigated by molecular markers. Theor. Appl. Genet. 100, 1155-1166.
- Ollitrault, F., Terol, J., Pina, J.A., Navarro, L., Talon, M., Ollitrault, P., 2010. Development of SSR markers from Citrus clementina (Rutaceae) BAC end sequences and interspecific transferability in Citrus. Am. J. Bot. 97, 124-129.
- Ollitrault, P., Garcia-Lor, A., Terol, J., Curk, F., Ollitrault, F., Talon, M., Navarro, L., 2014. Comparative values of SSRs, SNPs and InDels for citrus genetic diversity analysis. Acta Hortic. (Wagening.) 1065, 457-466.
- Ollitrault, P., Jacquemond, C., Dubois, C., Luro, F., 2003. Citrus. In: Hamon, P., Seguin, M., Perrier, X., Glaszmann, X. (Eds.), Genetic Diversity of Cultivated Plants. CIRAD, Montpellier, pp. 193-197.
- Oueslati, A., Salhi-Hannachi, A., Luro, F., Vignes, H., Mournet, P., Ollitrault, P., 2016. Genotyping by Sequencing reveals the interspecific C. maxima/C. reticulata admixture along the genomes of modern citrus varieties of mandarins, tangors, tangelos, orangelos and grapefruits. PLoS One 12, e0185618. https://doi.org/10.1371/ journal.pone.0185618.
- Perrier, X., Flori, A., Bonnot, F., 2003. Methods for data analysis. In: Hamon, Seguin, Perrier, Glaszmann (Eds.), Genetic Diversity of Cultivated Tropical Plants. Science Publishers, Inc. and CIRAD, Montpellier, pp. 31-63.
- Petretto, G.L., Sarais, G., Maldini, M.T., Foddai, M., Tirillini, B., Rourke, J.P., Chessa, M., Pintore, G., 2015. Citrus monstruosa discrimination among several Citrus species by multivariate analysis of volatiles: a metabolomic approach. J. Food Process. Preserv. 40, 950-957.
- Pritchard Lab, S.U., 2014. Structure software. http://pritchardlab.stanford.edu/structure. html.
- Pritchard, J.K., Stephens, M., Donnelly, P., 2000. Inference of population structure using multilocus genotype data. Genetics 155, 945-959.
- Risso, J.A., Poiteau, A., 1818. Histoire naturelle des oranges, Autod Ed. (Paris).
- Rosa, Nieddu, Petretto, Sarais, 2019. Chemical composition and in vitro bioactivity of essential oil obtained from the flavedo of 'Pompia', an ancient Sardinian fruit. J. Essent. Oil Res. https://doi.org/10.1080/10412905.2019.1606740.
- Snoussi, H., Duval, M.-F., Garcia-Lor, A., Belfalah, Z., Froelicher, Y., Risterucci, A.-M., Perrier, X., Jacquemoud-Collet, J.-P., Navarro, L., Harrabi, M., Ollitrault, P., 2012. Assessment of the genetic diversity of the Tunisian citrus rootstock germplasm. BMC Genet. 13, 16.
- Sutour, S., Luro, F., Bradesi, P., Casanova, J., Tomi, F., 2016. Chemical composition of the fruit oils of five Fortunella species grown in the same pedoclimatic conditions in Corsica (France) NPC, vol. 11. pp. 259-262.
- Viglietti, G., Galla, G., Porceddu, A., Barcaccia, G., Curk, F., Luro, F., Scarpa, G.M., 2019. Karyological analysis and DNA barcoding of Pompia: a first step toward the identification of its relatives. Plants 8, 83. https://doi.org/10.3390/plants8040083.
- Weising, K., Gardner, R.C., 1999. A set of conserved PCR primers for the analysis of simple sequence repeat polymorphisms in chloroplast genomes of dicotyledonous angiosperms. Genome 42, 9-19.
- Wu, G.A., Prochnik, S., Jenkins, J., Salse, J., Hellsten, U., Murat, F., Perrier, X., Ruiz, M., Scalabrin, S., Terol, J., Takita, M.A., Labadie, K., Poulain, J., Couloux, A., Jabbari, K., Cattonaro, F., Del Fabbro, C., Pinosio, S., Zuccolo, A., Chapman, J., Grimwood, J., Tadeo, F.R., Estornell, L.H., Munoz-Sanz, J.V., Ibanez, V., Herrero-Ortega, A., Aleza, P., Perez-Perez, J., Ramon, D., Brunel, D., Luro, F., Chen, C., Farmerie, W.G., Desany, B., Kodira, C., Mohiuddin, M., Harkins, T., Fredrikson, K., Burns, P., Lomsadze, A., Borodovsky, M., Reforgiato, G., Freitas-Astua, J., Quetier, F., Navarro, L., Roose, M., Wincker, P., Schmutz, J., Morgante, M., Machado, M.A., Talon, M., Jaillon, O., Ollitrault, P., Gmitter, F., Rokhsar, D., 2014. Sequencing of diverse Mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication. Nat. Biotechnol. 32, 656-662. https://doi.org/10.1038/nbt.2906.
- Wu, G.A., Terol, J.F., Ibanez, V., Lopez-Garcia, A., Perez-Roman, E., Borreda, C., Domingo, C., Tadeo, F., Carbonell-Caballero, J., Alonso, R., Curk, F., Du, D., Ollitrault, P., Roose, M.L., Dopazo, J., Gmitter, F.G., Rokhsar, D.S., Talon, M., 2018. Genomics of the origin and evolution of Citrus. Nature 554 311-136.