The complete reference genome for grapevine (Vitis vinifera L.) genetics and breeding

     The PN_T2T genome size was finally generated (494.87 Mb), being 69 Mb longer than 12X.v0  using the same statistical method. The k-mer metric was used to evaluate genomic homozygosity, estimated at 99.8%. The BUSCO for this genome is up to 98.5%.

The PN40024.T2T genome assembly: PN.fa

The PN40024.T2T gene annotation: PN_T2T.v5.1.gff3

The PN40024.T2T TE annotation: PN_T2T_TE.gff

The PN40024.T2T centromere annotation: PN.trf.gff3

The PN40024.T2T protein sequence: PN_protein.fa

The PN40024.T2T cds sequence: PN40024.cds.fa

Comparison of gene annotation among PN_T2T and PN_T2T.v5.1,  12X.v0, 12X.v2, PN40024.v4, PN40024.v4.1: correlation.list.txt

Mitochondrial assembly sequence of PN40024: PN_T2T_mit.fa

Annotation of mitochondrial assembly for PN40024:PN_T2T_mit.gff3

Chloroplast assembly sequence of PN40024: PN_T2T_chl.fa

Annotation of chloroplast assembly for PN40024: PN_T2T_chl.gff3

Citation: 

Please cite this paper when using the data of PN_T2T for your publications.

Xiaoya Shi, Shuo Cao, Xu Wang, Siyang Huang, Yue Wang, Zhongjie Liu, Wenwen Liu, Xiangpeng Leng, Yanling Peng, Nan Wang, Yiwen Wang, Zhiyao Ma, Xiaodong Xu, Fan Zhang, Hui Xue, Haixia Zhong, Yi Wang, Kekun Zhang, Amandine Velt, Komlan Avia, Daniela Holtgräwe, Jérôme Grimplet, José Tomás Matus, Doreen Ware, Xinyu Wu, Haibo Wang, Chonghuai Liu, Yuling Fang, Camille Rustenholz, Zongming Cheng, Hua Xiao, Yongfeng Zhou, The complete reference genome for grapevine (Vitis vinifera L.) genetics and breeding, Horticulture Research, Volume 10, Issue 5, May 2023, uhad061, https://doi.org/10.1093/hr/uhad061