Published January 4, 2024 | Version v1
Dataset Open

Annotation files for black the black honey bee genome from "The black honey bee genome: insights on specific structural elements and a first step towards pan-genomes"

Creators

  • 1. ROR icon National Research Institute for Agriculture, Food and Environment

Description

Annotation files for the AMelMel1.1 black honey bee Apis mellifera mellifera genome assembly described in:

Eynard, Sonia E., Christophe Klopp, Kamila Canale-Tabet, William Marande, Céline Vandecasteele, Céline Roques, Cécile Donnadieu, Quentin Boone, Bertrand Servin, and Alain Vignal. ‘The Black Honey Bee Genome: Insights on Specific Structural Elements and a First Step towards Pan-Genomes’. Preprint. Genomics, 7 December 2023. https://doi.org/10.1101/2023.12.06.570386.

The files were obtained by a liftover approach from the HAv3.1 assembly annotation files, as described in the Github markdown associated with the paper: https://github.com/avignal5/PacificBee/blob/main/AMelMel_3_Compare_Genomes.md

 

Files

Files (338.2 MB)

Name Size Download all
md5:5c649e77960f7fce9a62fdc3cda79577
126.2 MB Download
md5:77dc5ddefd72081149e014a727e7eae3
23.1 MB Download
md5:b6b64245151e2f09229e3560cce88c52
172.9 MB Download
md5:ed1b7cd0aaf393c169da94be9fb4253d
16.0 MB Download

Additional details

Related works

Continues
Other: https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_003314205.2/ (URL)

Funding

PacificBee INRAE
Département Génétique Animale

References

  • Eynard, Sonia E., Christophe Klopp, Kamila Canale-Tabet, William Marande, Céline Vandecasteele, Céline Roques, Cécile Donnadieu, Quentin Boone, Bertrand Servin, and Alain Vignal. 'The Black Honey Bee Genome: Insights on Specific Structural Elements and a First Step towards Pan-Genomes'. Preprint. Genomics, 7 December 2023. https://doi.org/10.1101/2023.12.06.570386.