SAOD- Statistical Analysis of Omics Data

Some datasets for the SAOD (Statistical Analysis of Omics Data) course (Aix-Marseille Université, D. Puthier).

The Homo_sapiens.GRCh38.110.chr.tsv was produced using the following command:

            gtftk retrieve -r 110

            gtftk convert_ensembl -i  Homo_sapiens.GRCh38.110.chr.gtf.gz | gtftk nb_exons | gtftk feature_size -t mature_rna | gtftk feature_size -t transcript -k tx_genomic_size | gtftk exon_sizes | gtftk intron_sizes | gtftk select_by_key -t | gtftk tabulate -k  '*' -u -x  > Homo_sapiens.GRCh38.110.chr.tsv