Molecular Docking, Simulation Against SARS-COV-2, Theoretical Study (DFT) and Superoxide Anion Scavenging by Cyclic Voltammetry of 2-Hydroxyphenyl Imino Naphthalen-2-ol
Creators
- 1. Laboratory of Electrochemistry of Molecular Material and Complex (LEMMC), Department of Process Engineering, Faculty of Technology. University of Ferhat Abbas Setif-1, Setif 19000, Algeria
- 1. Laboratory of Electrochemistry of Molecular Materials and Complex (LEMMC), Department of Process Engineering. Faculty of Technology. University of Ferhat Abbas Setif-1, Setif 19000. Algeria
- 2. Laboratory of Electrochemistry (LEM) and Materials. Department of Process Engineering. Faculty of Technology. University of Ferhat Abbas Setif-1, Setif 19000. Algeria.
- 3. Laboratory of Electrochemistry of Molecular Material and Complex (LEMMC), Department of Process Engineering, Faculty of Technology. University of Ferhat Abbas Setif-1, Setif 19000, Algeria
Description
Abstract: The simulation in terms of enzymatic activity and the estimation of the process transfer of electronic active sites of the synthesized compound: 2-hydroxyphenyl imino naphthalen-2-ol (Schiff basis) required the use of valuable calculation programs such as the docking, for which we used the Arguslab program and the Gaussian endowed to the calculation of the functional density theory of the molecule studied. And as the experimental study designed under difficult, costly or sometimes impossible conditions, the docking program simulates the molecular binding of the protein target with the ligand, which can reveal the arrangement of the hydrogen and hydrophobic bonds that link the active sites and the ligand; it is an economical step in terms of time and money that can lead to the selectivity of the product of interest in drug manufacturing. In this context, we are currently focused on the study of the inhibitory effect of this molecule with the enzyme (6lu7) fighting against covid-19, and have compared it to the drug chloroquine. The obtained results show that the calculated Gibbs free energy with protease is -9.215 Kcal/mol, which is almost more inhibiting than chloroquine (-7.2652 Kcal/mol). The DFT method allowed us to estimate that the potentially positive sites easily cede an electron when they are brought into contact with oxidizing species during the reduction reaction. The study of the superoxide anion scavenging activity via this product is performed practically by electrochemical way, the Gibbs standard energy (-16.9022 KJ/mol) explains that the reaction can spontaneously form very stable inactive species with the oxidizing ion.
Files
A202404010424.pdf
Files
(1.1 MB)
Name | Size | Download all |
---|---|---|
md5:048e03b49eadcdf50c41084009b591bd
|
1.1 MB | Preview Download |
Additional details
Identifiers
- DOI
- 10.54105/ijac.A2024.03021023
- EISSN
- 2582-8975
Dates
- Accepted
-
2023-10-15Manuscript received on 01 October 2023 | Revised Manuscript received on 12 October 2023 | Manuscript Accepted on 15 October 2023 | Manuscript published on 30 December 2023.
References
- D. J. Morecombe and D.W. Young. Synthesis of chirally labelled cysteines and the steric origin of C(5) in penicillin biosynthesis. Journal of the Chemical Society, Chemical Communications. 24(1995)2473-2670. https://doi.org/10.1039/C39750000198
- K.S. Kumar, S. Ganguly, R. Veerasamy, E. De Clercq, Synthesis, antiviral activity and cytotoxicity evaluation of Schiff bases of some 2-phenyl quinazoline-4 (3) H-ones, Eur. J. Med. Chem. 45 (11) (2010) 5474-5479. https://doi.org/10.1016/j.ejmech.2010.07.058.
- Ö. Güngöor, P. Gürkan, Synthesis and characterization of higher amino acid Schiff bases, as monosodium salts and neutral forms. Investigation of the intramolecular hydrogen bonding in all Schiff bases, antibacterial and anti-fungal activities of neutral forms, J. Mol. Struct. 1074 (2014) 62-70. https://doi.org/10.1016/j.molstruc.2014.05.032.
- A.A. Shanty, J.E. Philip, E.J. Sneha, M.R.P. Kurup, S. Balachandran, P.V. Mohanan, Synthesis, characterization and biological studies of Schiff bases derived from heterocyclic moiety, Bioorg. Chem. 70 (2017) 67-73. https://doi.org/10.1016/j.bioorg.2016.11.009.
- E. Pontiki, D. Hadjipavlou-Litina, A. Chaviara, Evaluation of anti-inflammatory and antioxidant activities of copper (II) Schiff mono-base and copper (II) Schiff base coordination compounds of dien with heterocyclic aldehydes and 2-amino-5-methyl-thiazole, J. Enzyme Inhib. Med. Chem. 23 (6) (2008) 1011-1017. https://doi.org/10.1080/14756360701841251. 6. S. Amer, N. El-Wakiel, H. El-Ghamry, Synthesis, spectral, antitumor and antimicrobial studies on Cu (II) complexes of purine and triazole Schiff base derivatives, J. Mol. Struct. 1049 (2013) 326-335. https://doi.org/10.1016/j.molstruc.2013.06.059.
- N. El-wakiel, M. El-keiy, M. Gaber, Synthesis, spectral, antitumor, antioxidant and antimicrobial studies on Cu (II), Ni (II) and Co (II) complexes of 4-[(1H-Benzoimidazol-2-ylimino) methyl] benzene-1, 3-diol, Spectrochim Acta Part A Mol. Biomol. Spectrosc. 147 (2015) 117-123. https://doi.org/10.1016/j.saa.2015.03.020.
- S.M. Bensaber, H. Allafe, N.B. Ermeli, S.B. Mohamed, A.A. Zetrini, S.G. Alsabri, M. Erhuma, A. Hermann, M.I. Jaeda, A.M. Gbaj, Chemical synthesis, molecular modelling, and evaluation of anticancer activity of some pyrazol-3-one Schiff base derivatives, Med. Chem. Res. 23 (12) (2014) 5120-5134.
- A. Sinha, K. Banerjee, A. Banerjee, S. Das, S.K. Choudhuri, Synthesis, characterization and biological evaluation of a novel vanadium complex as a possible anticancer agent, J. Organomet. Chem. 772 (2014) 34-41. https://doi.org/10.1016/j.jorganchem.2014.08.032
- H.A. Pramanik, D. Das, P.C. Paul, P. Mondal, C.R. Bhattacharjee, Newer mixed ligand Schiff base complexes from aquo-N-(20 -hydroxy acetophenone) glycinatocopper (II) as synthon: DFT, antimicrobial activity and molecular docking study, J. Mol. Struct. 1059 (2014) 309-319. https://doi.org/10.1016/j.molstruc.2013.12.009
- C.M. da Silva, D.L. da Silva, L.V. Modolo, R.B. Alves, M.A. de Resende, C.V. Martins, Â. de Fátima, Schiff bases: a short review of their antimicrobial activities, J. Adv. Res. 2 (1) (2011) 1-8. https://doi.org/10.1016/j.jare.2010.05.004
- R.P. Chinnasamy, R. Sundararajan, S. Govindaraj, Synthesis, characterization, and analgesic activity of novel schiff base of isatin derivatives, J. Adv. Pharm. Technol. Res. 1 (3) (2010)342-347. https://doi.org/10.4103/0110-5558.72428.
- H. Puchtler, S. Meloan, On Schiff's bases and aldehyde-Fuchsin: a review from H. Schiff to RD Lillie, Histochem. Cell Biol. 72 (3) (1981) 321-332. https://doi.org/10.1007/BF00501774.
- H. M. AbdEl-Lateef, K. A. Soliman, M.A. Al-Omair, M. Shaker, S. Adam. A combination of modeling and experimental approaches to investigate the novel nicotinohydrazone Schiff base and its complexes with Zn(II) and ZrO(II) as inhibitors for mild-steel corrosion in molar HCl. J. Taiwan Institute of Chemical Engineers. 120 (2021) 391-408. https://doi.org/10.1016/j.jtice.2021.03.036.
- W. A. Zoubi, Y. Gun Ko. Organometallic complexes of Schiff bases: Recent progress in oxidation catalysis, Journal of Organometallic Chemistry 822 (2016) 173-188 https://doi.org/10.1016/j.jorganchem.2016.08.023.
- M.J. Frisch et al. Gaussian 09, Revision D.01, Gaussian Inc., Wallingford, CT, 2009.
- L. Adjissi, N. Chafai, K. Benbouguerra, I. Kirouani, A. Hellal, H. Layaida, M. Elkolli, C. Bensouici, S. Chafaa. Synthesis, characterization, DFT, antioxidant, antibacterial, pharmacokinetics and inhibition of SARS-CoV-2 main protease of some heterocyclic
- hydrazones. J. Molecular Structure. 1270 (2022) 134005. https://doi.org/10.1016/j.molstruc.2022.134005.
- M. Elkolli, N. Chafai, S. Chafaa, I. Kadi, C. Bensouici, A. Hellal. New phosphinic and phosphonic acids: Synthesis, antidiabetic, anti-Alzheimer, antioxidant activity, DFT study and SARS-CoV-2 inhibition. J. Molecular Structure. 1268 (2022) 133701. https://doi.org/10.1016/j.molstruc.2022.133701.
- C. Sampath, K.V. Vani, Y. Kotaiah, N.H. Krishna, C.N. Raju and C.V. Rao. A facile and efficient One-pot Three Component Reaction (Kabachinik-Fields Reaction) for the Synthesis of Novel α-Aminophosphonates by 1, 4-Dimethylpiperazine as a new catalyst. Journal of Chemical and Pharmaceutical Research , 4 (2012) 1375-1382.
- N. Houas, S. Chafaa, N. Chafai, S. Ghedjati, M. Djenane, S. Kitouni, Synthesis, characterization, DFT study and antioxidant activity of (2-hydroxynaphthalen-1-yl) methyl 2-hydroxyphenyl amino phosphonic acid. Journal of Molecular Structure 1247 (2022) 131322. https://doi.org/10.1016/j.molstruc.2021.131322
- R. Greef, R. Peat, D.Pletcher. Instrumental Methods in Electrochimestry. Southampton Electrochimistry Group, Ellis Horwood Limited.USA. (1985).
- B. S. Tovrog, D. J. Kitko, and R. S Dragom, Nature of the Bound O2 in a Series of Cobalt Dioxygen Adducts. J. Am. Chem. Soc. 98 (1976) 5144. https://doi.org/10.1021/ja00433a016.
- M. H. Youcef, T. Benabdallah, H. Ilikti, and H. Reffas, Equilibrium Studies on the Synergic Liquid-Liquid Extraction Process of Copper (II) from Sulphate Media with Mixtures of some Bidentate Mono-Schiff Bases and Acyclic Polyether Non-ionic Surfactant in Chloroform, J. Solvent Extraction and Ion Exchange, 26, 5 (2008) 534-555. https://doi.org/10.1080/07366290802301408.
- M.E. Ortiz, L.J. Núñez-Vergara, J.A. Squella, Cyclic voltammetric behaviour of the O2/ redox couple at a HMDE and its interaction with nisoldipine, J. Electroanal. Chem. 519 (2002) 46-52. https://doi.org/10.1016/S0022-0728(01)00720-3.
- T. Sun, W. Xie, P. Xu, Superoxide anion scavenging activity of graft chitosane derivatives, Carbohydr. Polym. 58 (2004) 379-382. https://doi.org/10.1016/j.carbpol.2004.06.042.
- D. T. Sawyer, A. Sobkowiak, T. Matsushita. Metal [MLx; M = Fe, Cu, Co, Mn]/Hydroperoxide-Induced Activation of Dioxygen for the Oxygenation of Hydrocarbons: Oxygenated Fenton Chemistry. Acc. Chem.Res. 29(1996) 409-416.
- D. Vasudevan, H. Wendt, Electroreduction of oxygen in aprotic media, J. Electroanal. Chem. 392 (1995) 69-74. https://doi.org/10.1016/0022-0728(95)04044-O.
- M. Tsushima, K. Tokuda, T. Ohsaka, Use of hydrodynamic chronocoulometry for simultaneous determination of diffusion coefficients and concentrations of dioxygen in various media, Anal. Chem. 66 (1994) 4551-4556. https://doi.org/10.1021/ac00096a024.
- N. Houas , S. Kitouni, N. Chafai, S. Ghedjati , M. Djenane , Assia TOUNSI , New bi-phosphonate derivative: Synthesis, characterization, antioxidant activity in vitro and via cyclic voltammetry mode and evaluation of its inhibition of SARS-CoV-2 main protease. Journal of Molecular Structure. 2860 (23) 453-2. https://doi.org/10.1016/j.molstruc.2023.135356
- M. Mehri, N. Chafai, L. Ouksel, K. Benbouguerra, A. Hellal, S. Chafaa. Synthesis, electrochemical and classical evaluation of the antioxidant activity of three α-aminophosphonic acids: Experimental and theoretical investigation. J. Molecular Structure 1171 (2018) 179-189. https://doi.org/10.1016/j.molstruc.2018.05.074
- C. Le Bourvellec, D. Hauchard, A. Darchen, J.L. Burgot, M.L. Abasq, Validation of a new method using the reactivity of electrogenerated superoxide radical inthe antioxidant capacity determination of flavonoids, Talanta 75 (2008) 1098-1103. https://doi.org/10.1016/j.talanta.2008.01.007.
- A.D. Becke, Density-functional thermochemistry. The role of exact exchange, J. Chem. Phys. 98 (1993) 5648-5652. https://doi.org/10.1063/1.464913.
- C. Lee, W. Yang, R.G. Parr, Development of the Colle–Salvetti correlation-energy formula into a functional of the electron density, Phys. Rev. 37 (1988) 785-789. https://doi.org/10.1103/PhysRevB.37.785.
- E.F. Silva-Júnior, D.L. Silva, P.F.S. Santos-Júnior, I.J.S. Nascimento, S.W.D. Silva, T.L. Balliano, T.M. Aquino, J.X. Araújo-Júnior, Crystal structure and DFT calculations of 4,5-dichloropyridazin-3-(2H)-one, J. Chem. Pharm. Res. 8 (2016) 279-286.
- X. Liu et al. The Crystal Structure of 2019-nCoV Main Protease in Complex with an Inhibitor N3. Deposited: 2020-01-26 Re- leased: 2020-02-05. doi: 10.2210/pdb6LU7/pdb Available from:https://www. rcsb.org/structure/6LU7.
- G.L. Warren, T.D. Do, B.P. Kelley, A. Nicholls, S.D. Warren. Essential considerations for using protein-ligand structures in drug discovery. Drug Discov Today 17 (2012) 1270-81. https://doi.org/10.1016/j.drudis.2012.06.011.
- K.W. Lam, A. Syahida, Z. Ul-Haq, M.B. Abdul Rahman, N.H. Lajis. Synthesis and biological activity of oxadiazole and triazolothiadiazole derivatives as tyrosinase inhibitors. Bioorg Med Chem Lett 20 (2010) 3755-9. https://doi.org/10.1016/j.bmcl.2010.04.067.
- R. Bensegueni, M. Guergouri, C. Bensouici, M. Bencharif. Synthesis, Antioxidant, and Anti-tyrosinase Activity of Some Aromatic Oximes: An Experimental and Theoretical Study. J. Reports in Pharmaceutical Sciences. 8 (2) (2019) 195-203. https://doi.org/10.4103/jrptps.JRPTPS_46_18.
- M.A. Thompson. Molecular docking using ArgusLab, an efficient shape-based search algorithm and the AScore scoring function. ACS Meeting, Philadelphia, PA,(2004).
- Dassault Systems Biovia, Discovery Studio Modeling Environment, Release (2017). San Diego, CA: Dassault systemes; (2016).
- S.M. Kuzmin, S.A. Chulovskaya, V.I. Parfenyuk, Mechanism and superoxide scavenging activity of hydroxy substituted tetraphenylporphyrins via coulometric approach, J. Electroanal. Chem. 772 (2016) 80-88. https://doi.org/10.1016/j.jelechem.2016.04.024.
- Sridhar, A. V., Prasad, B. S., Mouli, K. V. V. N. R. C., Alanka, S., & Rajasekhar, M. (2020). Impact of Honeycomb Polylactide Infill% in FDM Printed PLA/Nylon for Improved Mechanical Properties. In International Journal of Recent Technology and Engineering (IJRTE) (Vol. 8, Issue 5, pp. 3662–3668).https://doi.org/10.35940/ijrte.e6556.018520
- Park, H. (2022). The Simplest Pharmacokinetic Equation in ADC (Antibody Drug Conjugate) or PDC (Peptide Drug Conjugate) Research. In International Journal of Advanced Pharmaceutical Sciences and Research (Vol. 2, Issue 5, pp. 1–4).https://doi.org/10.54105/ijapsr.c4017.082522
- Shujauddin, Dr. M., Alam, S., Rehman, S., & Ahmad, M. (2023). Scientific Evaluation of A Unani Pharmacopoeia-Based Formulation on BPH in Animal Model. In International Journal of Preventive Medicine and Health (Vol. 4, Issue 1, pp. 1–8). https://doi.org/10.54105/ijpmh.a1032.114123