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Published December 20, 2023 | Version v0.19.0
Software Open

monarch-initiative/monarch-app: v0.19.0

  • 1. @det-lab @tis-lab @monarch-initiative
  • 2. @greenelab
  • 3. LBNL
  • 4. Lawrence Berkeley National Laboratory
  • 5. @northeastern
  • 6. CU Anschutz, @tis-lab

Description

What's Changed

  • Add Resources (Bang Our Own Drum) by @glass-ships in https://github.com/monarch-initiative/monarch-app/pull/463
  • add blurb to resources page by @glass-ships in https://github.com/monarch-initiative/monarch-app/pull/485
  • update resource fixture by @glass-ships in https://github.com/monarch-initiative/monarch-app/pull/488
  • Fixed text that links to HPO by @nlharris in https://github.com/monarch-initiative/monarch-app/pull/455
  • Update PFR page by @glass-ships in https://github.com/monarch-initiative/monarch-app/pull/492
  • add ssh cache and key expiration for deployment workflow by @glass-ships in https://github.com/monarch-initiative/monarch-app/pull/491
  • Simplify loading of converter in CurieService by @cthoyt in https://github.com/monarch-initiative/monarch-app/pull/486
  • add send to pheno ex button, obsolete node, misc by @vincerubinetti in https://github.com/monarch-initiative/monarch-app/pull/482
  • update publications (and makefile/script slightly) by @glass-ships in https://github.com/monarch-initiative/monarch-app/pull/493
  • Updating Teams Page again by @glass-ships in https://github.com/monarch-initiative/monarch-app/pull/487
  • Implement SemsimServer search by @glass-ships in https://github.com/monarch-initiative/monarch-app/pull/499
  • Quick fixes for semsim search / API config by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/503
  • Populate uri for entities when extra=True by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/502
  • Adds a full entity to the semsim search response by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/504
  • Reduce limit on phenotype fetching to the 500 record max by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/509
  • Bring back oak and phenio (text annotator) by @vincerubinetti in https://github.com/monarch-initiative/monarch-app/pull/497
  • Pass the phenio db path to the oak implementation initializer by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/510
  • remove old ssh keys in action by @glass-ships in https://github.com/monarch-initiative/monarch-app/pull/511
  • Improve association table search by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/268
  • Replace CuriesService with direct usage of curies.Converter by @cthoyt in https://github.com/monarch-initiative/monarch-app/pull/494
  • Quick PR to turn off oak init and hide the text annotator endpoints so that we can start up on GCP again. by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/512
  • generate category enums by solr query by @glass-ships in https://github.com/monarch-initiative/monarch-app/pull/515
  • Semantic Search UI by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/514
  • Fixes specifying categories on the search endpoint by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/517

New Contributors

  • @cthoyt made their first contribution in https://github.com/monarch-initiative/monarch-app/pull/486

Full Changelog: https://github.com/monarch-initiative/monarch-app/compare/v0.18.1...v0.19.0

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