Scripts reproducing the analyses of the paper "HCMV exploits STING signaling and counteracts IFN and ISG induction to facilitate infection of dendritic cells" by Costa et al

This is the code to reproduce the data analyses in the manuscript "HCMV exploits STING signaling and counteracts IFN and ISG induction to facilitate infection of dendritic cells".

Required software and packages:

R (4.2.1)
circlize (0.4.15)
ComplexHeatmap (2.12.1)
cowplot (1.1.1)
future (1.28.0)
ggalluvial (0.12.5)
ggpubr (0.4.0)
ggrepel (0.9.1)
GSVA (1.44.5)
msigdbr (7.5.1)
patchwork (1.1.2)
plyr (1.8.7)
presto (1.0.0)
RColorBrewer (1.1-3)
reshape2 (1.4.4)
sctransform (0.3.5)
Seurat (4.2.0)
SeuratDisk (0.0.0.9020)
SeuratWrappers (0.3.1)
velocyto.R (0.6)

Howto: Execute all scripts in order by first changing into the directory, and then executing the script:

cd 00_QC; Rscript 00_QC.R; cd ..