sims-lab/CapCruncher: CapCruncher v0.3.9 - Bugfixes and Performance improvements

What's Changed

• build(deps): Update plotly requirement from <=5.17.0,>5.0.0 to >5.0.0,<=5.18.0 by @dependabot in https://github.com/sims-lab/CapCruncher/pull/218
• chore: pyarrow minimum to 14.0.1 by @alsmith151 in https://github.com/sims-lab/CapCruncher/pull/231
• fix(deduplicate-slices): Wrong Snakemake parameters supplied to script when empty input by @alsmith151 in https://github.com/sims-lab/CapCruncher/pull/232
• Fixes UCSC hub generated when create == no by @alsmith151 in https://github.com/sims-lab/CapCruncher/pull/230
• CCTrack file_type now accepts all cb tracks by @alsmith151 in https://github.com/sims-lab/CapCruncher/pull/229
• fix(report): Use the active kernel for report generation by @alsmith151 in https://github.com/sims-lab/CapCruncher/pull/233
• feat(utils): added make_chicago_map cli command by @alsmith151 in https://github.com/sims-lab/CapCruncher/pull/228
• Reduce annotation memory usage by @alsmith151 in https://github.com/sims-lab/CapCruncher/pull/236
• Feat enable aggregated track plotting by @alsmith151 in https://github.com/sims-lab/CapCruncher/pull/235
• chore(deps): pinned polars by @alsmith151 in https://github.com/sims-lab/CapCruncher/pull/240
• feat(pileup): added to_pyranges by @alsmith151 in https://github.com/sims-lab/CapCruncher/pull/227
• fix(pipeline): using fastqc snakemake wrapper by @alsmith151 in https://github.com/sims-lab/CapCruncher/pull/239
• fix(pipeline): Use recursion to format config dictionary by @alsmith151 in https://github.com/sims-lab/CapCruncher/pull/242
• fix(ucsc-hub): Correct errors when generating the "Replicates" composite track by @alsmith151 in https://github.com/sims-lab/CapCruncher/pull/243
• feat(pipeline): plotting logs moved by @alsmith151 in https://github.com/sims-lab/CapCruncher/pull/238
• fix(cis-and-trans-stats): fixes OOM error by @alsmith151 in https://github.com/sims-lab/CapCruncher/pull/250
• build(deps): Update pydantic requirement from <2.5.0,>2.4.0 to >2.4.0,<2.6.0 by @dependabot in https://github.com/sims-lab/CapCruncher/pull/248
• build(deps): Update pyranges requirement from <=0.0.127 to <=0.0.129 by @dependabot in https://github.com/sims-lab/CapCruncher/pull/247

Full Changelog: https://github.com/sims-lab/CapCruncher/compare/V0.3.8...v0.3.9