Published December 15, 2023 | Version v1
Dataset Open

Macrohaplotype cache objects and databases

  • 1. ROR icon University of North Texas Health Science Center
  • 2. UNTHSC

Description

These are (bzip compressed) objects; each individual file represents a single PCR simulation of a single cell's worth of DNA. All results assume 100% sequencing efficiency and 0 sequencing error (but yes to PCR error, in the form of +/- stutter as well as single nucleotide PCR error).

These objects can be used by mhapSimulator.py (https://github.com/Ahhgust/MacrohapSimulator.git) to (more quickly) generate simulations of the PCR process (single source, DNA mixtures, any amount of DNA template)

Also included are macrohaplotypes drawn from the 1000 Genomes Project.

 

 

Files

Files (2.0 GB)

Name Size Download all
md5:abe4fc2e5d3628175d6bdd66d3fb4117
837.7 kB Download
md5:b4a433a407e921fa8edd9d3be3f1201c
366.0 MB Download
md5:948cf47149095316f62b3b12324c6aaf
551.7 MB Download
md5:9763cbc5c450441657b0f0a646fd862c
351.7 MB Download
md5:53e519643fb963a649fb11d7b66f17c6
357.0 MB Download
md5:93d2f4780d9721de6154f707b7a97651
366.6 MB Download

Additional details

Funding

National Institute of Justice
Enhanced mixture interpretation with long-read DNA sequencing 15PNIJ-21-GG-04159-RESS