ROMI - Plant phenotyping test data

This is an example and test dataset acquired (real_plant) and generated (virtual_plant and arabidopsis000) in the context of the ROMI's project plant phenotyping effort.

Archive configs.zip contains the configuration files used with the romi_run_task CLI to reconstruct the datasets.

The 3 RAW datasets are in the following archives:

• arabidospsis000.zip:  72 snapshots of a virtual Arabidopsis thaliana plant generated with the Virtual Plant Imager;
• real_plant.zip: 60 images of a Col-0 Arabidopsis thaliana plant acquired with the Plant Imager;
• virtual_plant.zip: 18 snapshots of a virtual Arabidopsis thaliana plant generated with the Virtual Plant Imager;

The 2 analyzed datasets are in the following archives:

• real_plant_analyzed.zip: the real_plant dataset reconstructed using the AnglesAndInternodes task with the config/test_geom_pipe_real.toml configuration file;
• virtual_plant_analyzed.zip: the virtual_plant dataset reconstructed using the AnglesAndInternodes task with the config/test_geom_pipe_virtual.toml configuration file;

To reproduce the reconstruction pipelines from the Plant-3D-Vision library, you may use the roboticsmicrofarms/plant-3d-vision docker image. Have a look at the official documentation here.

Archive  models.zip contains a preconfigured directory structure with the trained CNN weight file Resnet_896_896_epoch50.pt.