Lund Bladder Cancer Group - Lund Taxonomy 2023 Classifier - Training Data

Raw and processed training data used for the Lund Taxonomy 2023 gene expression classifier for urothelial carcinoma.

The dataset contains the raw .CEL files for 3 Affymetrix Gene 1.0 ST cohorts: Lund2017 (n=307, GSE83586), Lund2020 (n=173, GSE128959), Lund2022 (n=310, 117 from GSE169455, 37 from GSE222073, and 156 previously unpublished samples). Code examples for RMA and SCAN.UPC normalization for Affymetrix Gene, Exon, and HTA2 arrays used in the study is included. Hybridization batch information is available for each array cohort.

The dataset contains Kallisto and Salmon transcript quantification files for 265 RNA-sequenced tumors and the tx2gene file+code for transcript to gene summarization using txImport