Published December 12, 2023
| Version v1
Dataset
Open
LC-MS/MS and PSM data from "Benchmarking the identification of a single degraded protein to explore optimal search strategies for ancient proteins"
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1.
University of Cambridge
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2.
University of Copenhagen
Description
This dataset contains the data analyzed in:
Rodriguez Palomo I, Nair B, Chang Y, Dartigues B, Dekker K, Mackie M, Evans M, Macleod R, Olsen JV, Collins MJ. (2023) "Benchmarking the identification of a single degraded protein to explore optimal search strategies for ancient proteins"
It contains the following data:
- raw_files.zip Thermo RAW files for the 0, 4 and 128 days samples
- benchmark_results.zip PSMs data from the analysis of the RAW files
- Data from runs in Mascot, Fragpipe, pFind, Metamorpheus, MaxQuant and DeNovoGUI
- Parameters and workflow files for MaxQuant and Fragpipe
Files
benchmark_results.zip
Additional details
Funding
- European Commission
- PlaCe – Training the next generation of archaeological scientists: Interdisciplinary studies of pre-modern Plasters and Ceramics from the eastern Mediterranean 956410
- European Commission
- TALENT – TALENT Doctoral Fellowship Programme 801199
- European Commission
- B2C – Beasts to Craft: BioCodicology as a new approach to the study of parchment manuscripts 787282