Published December 12, 2023
| Version v1
Dataset
Open
Supplemented SingleM package inclusive of MAGs beyond GTDB
Description
The main SingleM reference package is available at https://zenodo.org/doi/10.5281/zenodo.5739611
Here, the default GTDB R214-based SingleM reference database (metapackage) was supplemented with genomes from the 'UHGG' version 2(Almeida et al. 2021), 'SPIRE' (excluding "specI" isolate genomes)(Schmidt et al. 2023), 'SMAG'(Ma et al. 2023), 'GEM'(Nayfach et al. 2021) MAG collections, as well as those from derived from Oceans by Paoli et. al.(Paoli et al. 2022).
Files
Files
(2.2 GB)
| Name | Size | Download all |
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md5:7b5a42277862e627137506bc8f53046e
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2.2 GB | Download |
Additional details
Funding
- U.S. National Science Foundation
- BII-Implementation: The EMERGE Institute: Identifying EMergent Ecosystem Responses through Genes-to-Ecosystems Integration 2022070
- Australian Research Council
- ARC Future Fellowships - Grant ID: FT210100521 FT210100521
- Australian Research Council
- Global integration of microbial community and climate data DP230101171