mOTUs3 - genome metadata

A tab-delimited file listing genomes used in mOTUs3 with metadata that map each genome to a mOTU and provide additional information such as: the data source, quality metrics and download links. Genome sequence files can be programmatically downloaded with a tool available at: https://github.com/motu-tool/motus_v3_genomes.

GENOME                     Genome name 

MOTU                       Assigned mOTU 

GENOME_SOURCE              progenomes2.0 or extension 

MGS_ADDED                  Were MGs from this genome added to the database? 

CHECKM_COMPLETENESS        CheckM v1 completeness score 

CHECKM_CONTAMINATION       CheckM v1 contamination score GUNC_PROGENOMES2.1        

 GUNC result using the progenomes 2.1 database 

ANVIO_COMPLETENES          ANVIO v7.1 completeness score 

ANVIO_CONTAMINATION        ANVIO v7.1 contamination score 

GTDB-R207                  GTDB classification using the database release R207 

ENVIRONMENT                Source environment of genomes. Retrieved either from progenomes2.0 or from the associated biosample description 

DOWNLOAD_LINK              Link to file containing genomes (one file per mOTU) DOWNLOAD_MD5               MD5 sum of the file ORIGINAL_DOWNLOAD_LINK     Link to original genome if available