Published December 5, 2023 | Version v1

The code and software to identify putative trace makers of horizontal trace fossils: Palaeontology

  • 1. ROR icon Natural History Museum

Contributors

Data curator:

Data manager:

  • 1. ROR icon Natural History Museum

Description

These are the code ("CurveGithub.m") and the free software ("Curvesoftware.exe") that help you identify putative trace makers of horizontal trace fossils with frequency spectrum and autocorrelation function. You can also use it to study the frequency and size of self-repeating patterns in a horizontal trace. You can use the metrics to quantify ichnotaxonomy as well. An example of the coordinates of a horizontal trace is "A curve-Github.txt", which is output from Getdata Graph Digitizer, with the first describing sentence in the output file removed, leaving cooridnates only. Zero-value is not allowed in the coordinates. The paper is published in Palaeontology, with doi: 10.1111/pala.12686, https://onlinelibrary.wiley.com/doi/abs/10.1111/pala.12686 

IMPORTANT NOTICE !!!!!

MATLAB code Line 41:

"plot(ss,YY(M:M+99)/max(YY(M:M+99)),'r-'); " means plotting the autocorrelation over sampling steps;

If you would like to plot the autocorrelation over normalized length (as in both the manuscript and the free software), it should be

"plot(ss/Fs,YY(M:M+99)/max(YY(M:M+99)),'r-'); "

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The free software has been updated to Version 6, incorporating several new features and functionalities:

https://zenodo.org/records/20399534, which is appended to the bandwidth paper published in Palaeo3 (https://doi.org/10.1016/j.palaeo.2026.113973).

Files

A curve-Github.txt

Files (102.0 MB)

Name Size Download all
md5:10bc90aaf1d40d231aee3794bd0f5eb0
7.0 kB Preview Download
md5:61b130848c50277857f923d5f7d019e7
1.3 kB Download
md5:bc33229a87707ac29c1a8093b9ce0a56
102.0 MB Download

Additional details

Related works

Is published in
Dataset: 10.1111/pala.12686 (DOI)

Dates

Accepted
2023-12

References

  • Quantitative ichnology A novel framework to determine the producers of locomotory trace fossils – the ichnogenus Gordia as a case study. Palaeontology, 2023, 66(6):e12686. DOI: 10.1111/pala.12686