Published December 1, 2023
| Version v2
Dataset
Open
FESNov gene families
Creators
- Rodriguez del Rio, Alvaro (Data collector)1
- Giner-Lamia, Joaquín (Other)1
- P. Cantalapiedra, Carlos (Other)1
- Botas, Jorge (Other)1
- Deng, Ziqi (Data collector)1
- Hernandez-Plaza, Ana (Other)1
- Marti, Munar-Palmer (Other)1
- Santamaría-Hernando, Saray (Other)1
- Rodríguez-Herva, Jose J (Other)1
- Ruscheweyh, Hans-Joachim (Data collector)2
- Paoli, Lucas (Other)2
- S.B. Schmidt, Thomas (Other)3
- Sunagawa, Sinichi (Other)2
- Bork, Peer (Other)3
- Emilia, López-Solanilla (Other)1
- Luis Pedro, Coelho (Other)4
- Huerta-Cepas, Jaime (Data collector)1
-
1.
Centre for Plant Biotechnology and Genomics
- 2. Department of Biology, Institute of Microbiology and Swiss Institute of Bioinformatics, ETH Zürich
- 3. Structural and Computational Biology Unit, European Molecular Biology Laboratory
- 4. Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University
Description
Functionally and Evolutionarily Significant Novel (FESNov) gene family predictions. This repository includes:
- GTBD r202 taxonomic labels for all the genomes analyzed (genome2taxonomy.r202.tab)
- Plasflow and Seeker predictions for all the genomes analyzed (plasflow.json.gz and seeker.json.gz)
- Fasta files for each FESNov gene family (FESNov_families.fasta.tar.gz)
- Gene family trees for each FESNov gene family (FESNov_families.trees.tar.gz)
- HMM profiles for each FESNov gene family (FESNov_families.hmm.tar.gz)
- FESNov gene family statistics (FESNov_fams_stats.tab)
- Functional predictions and habitat distribution of all FESNov gene families (FESNov_fams_funct_hab_info.json.gz)
- FESNov gene family PDB files with structure predictions by AlphaFold (FESNov_families.pdb.tar.gz), and their associated pLDDT values (pLDDT_values.tab)
Files
Files
(19.8 GB)
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md5:f28f8a90fc5e78828e37e75f47daf27a
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md5:1a266ba5e452459f97b8fc47d35fe00a
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md5:34663dfa938693ee4a5cb5e7afc0586c
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md5:b45491d57e7bb08e330ceee43f601add
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10.5 MB | Download |
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md5:472d13c50c27ef077eed4da3a57c1d3a
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1.2 GB | Download |