Published November 27, 2023
| Version 1.4.0
Software
Open
nf-core/differentialabundance: v1.4.0 - 2023-11-27
Creators
- 1. DeepLife
- 2. Boehringer Ingelheim
- 3. University of Rostock
- 4. Seqera Labs
- 5. HKI Jena, MPI-EVA Leipzig
Description
This PR contains a particularly important fix in https://github.com/nf-core/differentialabundance/pull/20, which resolves a long-standing issue in proper usage of abundance values from the rnaseq workflow. Users can now take the lengths from that workflow (using rnaseq >=v3.13.2) and pass them to this workflow to account for transcript length biases across samples.
What's Changed
- Post 1.3.1 release changes by @pinin4fjords in https://github.com/nf-core/differentialabundance/pull/186
- Fix sample metadata table in the html report not paginating by @davidecarlson in https://github.com/nf-core/differentialabundance/pull/195
- Fix GSEA indent in report by @WackerO in https://github.com/nf-core/differentialabundance/pull/190
- Add optional scree plot to report by @WackerO in https://github.com/nf-core/differentialabundance/pull/192
- Enable all genes for exploratory by @WackerO in https://github.com/nf-core/differentialabundance/pull/188
- Add DESeq text to report by @WackerO in https://github.com/nf-core/differentialabundance/pull/193
- Added colors to volcano by @WackerO in https://github.com/nf-core/differentialabundance/pull/194
- Document correct RNAseq matrix usage by @pinin4fjords in https://github.com/nf-core/differentialabundance/pull/200
- Update DESeq2/Limma by @WackerO in https://github.com/nf-core/differentialabundance/pull/201
- Add design to report by @WackerO in https://github.com/nf-core/differentialabundance/pull/189
- Transcript lengths for DESeq2 by @pinin4fjords in https://github.com/nf-core/differentialabundance/pull/203
- Release v1.4.0 by @pinin4fjords in https://github.com/nf-core/differentialabundance/pull/204
- V1.4.0 fixes by @pinin4fjords in https://github.com/nf-core/differentialabundance/pull/206
- Dev -> master for v1.4.0 by @pinin4fjords in https://github.com/nf-core/differentialabundance/pull/205
New Contributors
- @davidecarlson made their first contribution in https://github.com/nf-core/differentialabundance/pull/195
Full Changelog: https://github.com/nf-core/differentialabundance/compare/1.3.1...1.4.0
Files
nf-core/differentialabundance-1.4.0.zip
Files
(5.5 MB)
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Additional details
Related works
- Is supplement to
- Software: https://github.com/nf-core/differentialabundance/tree/1.4.0 (URL)