Published November 22, 2023 | Version 1.5.0
Software Open

Bidsme: expandable BIDS-ifier of brain imagery datasets

  • 1. GIGA - Cyclotron Research Centre in vivo imaging, University of Liege, Liege, Belgium
  • 2. Télécom Physique Strasbourg, Université de Strasbourg, France

Description

The purpose of Bidsme is to organize a given medical image dataset following the "Brain Imaging Data Structure" (BIDS). Bidsme is an all-in-one organizer tool, that not only renames and re-structures the original data files, but also extracts and formats the necessary metadata. During the data organization, Bidsme provides the user with the full control over these processes, allowing the use of non-standard metadata and file names, as well as the addition of modalities not yet described by the BIDS. Instead of strictly imposing this structure, Bidsme allows the user to fully configure how the source dataset will be organized and what metadata will be included. Bidsme can be used both as Python package and command-line tool, and includes a tutorial with a test dataset.

Other

This work and Nikita Beliy were supported by the Fonds National de la Recherche Scientifique (F.R.S.-FNRS, Belgium) through Grant No. EOS 30446199 and the University of Liège. Camille Guillemin was supported by University of Liege. Christophe Phillips is supported by the Fonds National de la Recherche Scientifique (F.R.S.-FNRS, Belgium).

As Bidsme was developped based on Bidscoin package, we would like to thanks its developpers, and in particular its lead developper Marcel Zweirs.

Files

CyclotronResearchCentre/bidsme-1.5.0.zip

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Additional details

Related works

Is derived from
Software: 10.3389/fninf.2021.770608 (DOI)
Is supplement to
Software: https://github.com/CyclotronResearchCentre/bidsme/tree/1.5.0 (URL)