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Published November 21, 2023 | Version 3.13.2
Software Open

nf-core/rnaseq: nf-core/rnaseq v3.13.2 - Cobalt Colt

Creators

  • 1. Seqera Labs
  • 2. @seqeralabs
  • 3. Boehringer Ingelheim
  • 4. @BridgeBioAnalytics
  • 5. DeepLife
  • 6. @seqeralabs | Stockholm
  • 7. Inivata
  • 8. @qbicsoftware
  • 9. @NBISweden
  • 10. @SciLifeLab
  • 11. Francis Crick Institute @crickbabs
  • 12. QBiC
  • 13. HKI Jena, MPI-EVA Leipzig
  • 14. The Francis Crick Institute
  • 15. CRG
  • 16. @Functional-Genomics-Lab
  • 17. @maizeumn
  • 18. bilille
  • 19. TU Munich

Description

What's Changed

  • Fix pipeline failure when transcript_fasta not provided and skip_gtf_filter is set to TRUE by @RHReynolds in https://github.com/nf-core/rnaseq/pull/1126
  • Enlarge the sampling range for column determination in FilterGTF script. by @MatthiasZepper in https://github.com/nf-core/rnaseq/pull/1127
  • Overhaul tximport.r, output length tables by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1123
  • Ensure pseudoaligner is set if pseudoalignment is not skipped by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1124
  • Dev -> master for 3.13.2 release by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1128

New Contributors

  • @RHReynolds made their first contribution in https://github.com/nf-core/rnaseq/pull/1126

Full Changelog: https://github.com/nf-core/rnaseq/compare/3.13.1...3.13.2

Files

nf-core/rnaseq-3.13.2.zip

Files (6.1 MB)

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Additional details

Related works

Is supplement to
Software: https://github.com/nf-core/rnaseq/tree/3.13.2 (URL)