Published May 7, 2026 | Version 3.26.0
Software Open

nf-core/rnaseq: nf-core/rnaseq v3.26.0 - Chromium Cuttlefish

Authors/Creators

  • 1. Seqera
  • 2. @seqeralabs
  • 3. Boehringer Ingelheim
  • 4. @seanome
  • 5. @SciLifeLab
  • 6. Inivata
  • 7. Johns Hopkins University
  • 8. NVIDIA
  • 9. @NBISweden
  • 10. @qbicsoftware
  • 11. Seqera Labs
  • 12. Francis Crick Institute @crickbabs
  • 13. University of Pavia
  • 14. Altos Labs, Cambridge Institute of Science
  • 15. HKI Jena, MPI-EVA Leipzig
  • 16. @ScilifelabDataCentre
  • 17. >_ glich
  • 18. CRG

Description

What's Changed

  • Bump version after release 3.25.0 by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1821
  • Patch release 3.25.1: trimgalore same-workdir-retry cleanup by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1823
  • docs(changelog): restore #1821 entry under 3.25.1 by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1824
  • Disambiguate FastQC General Stats columns; revert 3.25.1 release bump by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1829
  • bump(trimgalore): module to 2.1.0 (TrimGalore v2 Oxidized Edition GA) by @FelixKrueger in https://github.com/nf-core/rnaseq/pull/1789
  • Important! Template update for nf-core/tools v4.0.2 by @nf-core-bot in https://github.com/nf-core/rnaseq/pull/1827
  • Important! Template update for nf-core/tools v4.0.0 by @nf-core-bot in https://github.com/nf-core/rnaseq/pull/1826
  • Suppress non-comparable lengthScaledTPM gene-count files in --skip_quantification_merge mode by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1832
  • fix(tximport): publish augmented tx2gene actually used by tximport by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1831
  • feat(star): gate legacy STAR pin on per-entry star_legacy flag by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1834
  • Drop legacy STAR 2.6.1d pin; upgrade iGenomes index params instead by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1835
  • Reinstall trimgalore + add process_low_memory label to base.config by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1836
  • Bump version to 3.26.0 ahead of release by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1837
  • Address review feedback from #1838 by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1839
  • Address review feedback from #1838 (Vag) by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1840
  • fix(trimgalore): restore --cores 8 by pinning TRIMGALORE to 12 cpus by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1841
  • fix(trimgalore): drop TRIMGALORE override from 12 to 8 cpus by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1842
  • Dev -> master for nf-core/rnaseq 3.26.0 by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1838

New Contributors

  • @FelixKrueger made their first contribution in https://github.com/nf-core/rnaseq/pull/1789

Full Changelog: https://github.com/nf-core/rnaseq/compare/3.25.0...3.26.0

Files

nf-core/rnaseq-3.26.0.zip

Files (7.2 MB)

Name Size Download all
md5:6bf7fe2ea0ae153f61b9ae5994481b2b
7.2 MB Preview Download

Additional details

Related works

Is supplement to
Software: https://github.com/nf-core/rnaseq/tree/3.26.0 (URL)

Software

Repository URL
https://github.com/nf-core/rnaseq