Published November 20, 2023
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Salmonella pangenome genes
Description
Our pangenome was created by concatenating our highest quality Salmonella short read metagenome assembled genome (Leleiwi et.al, 2023) and our best long read Salmonella assembled genome. After filtering duplicate genes at 99% minimum sequence identity using Mmseqs2 (Release 7-4e23d), our Salmonella pangenome is 99.99% identical to the Joint Genome Institute Salmonella isolate. Raw sequencing and MAGs used to generate this pangenome are available at NCBI under BioProject PRJNA348350.
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