LieberInstitute/spatial_DG_lifespan: v1.0.0

The Github repository contains a variety of scripts that can be run on the SpatialExperiment object e.g., for quality control, unsupervised spatial clustering, pseudo-bulking data, differential expression, and surveying of gene sets from other publications.
Here, we include two SpatialExperiment S4 Class storage (spe) objects. The basic spe object stores the raw counts for all the Visium experiments and metadata. The processed spe object is after quality control, batch correction, data integration, unsupervised spatial clustering, cell-type deconvolution, and also contains the metadata.
Also included are compressed files for the raw images of haematoxylin and eosin-stained tissue for each Visium slide.