Supplementary Files

Table S1: Linkage Disequilibrium (r2) between marker pairs separated by different distances in a simulated beef cattle population (A); Table S2: Linkage Disequilibrium (r2) between marker pairs separated by different distances in a simulated beef cattle population (B); Table S3: Linkage Disequilibrium (r2) between marker pairs separated by different distances in a simulated beef cattle population (C); Table S4: Linkage Disequilibrium (r2) between marker pairs separated by different distances in a simulated beef cattle population (D2); Table S5: Linkage Disequilibrium (r2) between marker pairs separated by different distances in a simulated beef cattle population (E); Table S6: Linkage Disequilibrium (r2) between marker pairs separated by different distances in a simulated beef cattle population (F); Script S1: Simulation code for generic beef cattle populations (purebred and crossed); Script S2: Additional functions for AlphaSimR; Video S1: The transmission of haplotypes in a trio (mp4 format without audio); Video S2: The transmission of haplotypes over three generations (mp4 format without audio); Video S3: The transmission of haplotypes in half-siblings (mp4 format without audio).