Published November 7, 2023
| Version 2.5.0
Software
Open
nf-core/eager: 2.5.0 - Bopfingen -2023-11-07
Creators
- James A. Fellows Yates1
- Alexander Peltzer2
- Thiseas C. Lamnidis3
- Maxime Borry4
- Zandra Fagernäs
- Ido Bar5
- Aida Andrades Valtueña3
- Alexandre Gilardet6
- nf-core bot
- Maxime U Garcia7
- Evan Floden8
- Phil Ewels9
- Patrick Hüther10
- Charles Plessy
- Fabian Lehmann11
- Gisela Gabernet
- sc13-bioinf
- Åshild J. Vågene
- Harshil Patel12
- Olga Botvinnik13
- Selina Carlhoff14
- Alex Hübner
- marcel-keller
- 1. HKI Jena, MPI-EVA Leipzig
- 2. Boehringer Ingelheim
- 3. Max Planck Institute for Evolutionary Anthropology
- 4. Max Planck institute for Evolutionary Anthropology
- 5. Griffith University
- 6. Centre for Palaeogenetics
- 7. @seqeralabs | Stockholm
- 8. Seqera Labs and @nextflow-io
- 9. @seqeralabs
- 10. @imbforge
- 11. Humboldt University of Berlin
- 12. Seqera Labs
- 13. @BridgeBioAnalytics
- 14. MPI-EVA
Description
Added
- #1020 Added mapDamage2 as an alternative for damage calculation.
Fixed
- #1017 Fixed file name collision in niche cases with multiple libraries of multiple UDG treatments.
- #1024
multiqc_general_stats.txtis now generated even if the table is a beeswarm plot in the report. - #655 Updated RG tags for all mappers. RG-id now includes Sample as well as Library ID. Added
LB:tag with the library ID. - #1031 Always index fasta regardless of mapper. This ensures that DamageProfiler and genotyping processes get submitted when using bowtie2 and not providing a fasta index.
Dependencies
multiqc: 1.14 -> 1.16
Deprecated
Files
nf-core/eager-2.5.0.zip
Files
(17.9 MB)
| Name | Size | Download all |
|---|---|---|
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md5:b96a5a613c8305e5fa97711fb56af0c6
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Additional details
Related works
- Is supplement to
- Software: https://github.com/nf-core/eager/tree/2.5.0 (URL)