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Published November 7, 2023 | Version 2.5.0
Software Open

nf-core/eager: 2.5.0 - Bopfingen -2023-11-07

Creators

  • 1. HKI Jena, MPI-EVA Leipzig
  • 2. Boehringer Ingelheim
  • 3. Max Planck Institute for Evolutionary Anthropology
  • 4. Max Planck institute for Evolutionary Anthropology
  • 5. Griffith University
  • 6. Centre for Palaeogenetics
  • 7. @seqeralabs | Stockholm
  • 8. Seqera Labs and @nextflow-io
  • 9. @seqeralabs
  • 10. @imbforge
  • 11. Humboldt University of Berlin
  • 12. Seqera Labs
  • 13. @BridgeBioAnalytics
  • 14. MPI-EVA

Description

Added

  • #1020 Added mapDamage2 as an alternative for damage calculation.

Fixed

  • #1017 Fixed file name collision in niche cases with multiple libraries of multiple UDG treatments.
  • #1024 multiqc_general_stats.txt is now generated even if the table is a beeswarm plot in the report.
  • #655 Updated RG tags for all mappers. RG-id now includes Sample as well as Library ID. Added LB: tag with the library ID.
  • #1031 Always index fasta regardless of mapper. This ensures that DamageProfiler and genotyping processes get submitted when using bowtie2 and not providing a fasta index.

Dependencies

  • multiqc: 1.14 -> 1.16

Deprecated

Files

nf-core/eager-2.5.0.zip

Files (17.9 MB)

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md5:b96a5a613c8305e5fa97711fb56af0c6
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Additional details

Related works

Is supplement to
Software: https://github.com/nf-core/eager/tree/2.5.0 (URL)