Published November 7, 2023 | Version v0.1.1
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Batch job scripts for analysing CLED plate sweeps from a study in Punjab, Pakistan

Creators

  • 1. University of Helsinki

Description

Batch job scripts for analysing CLED plate sweeps from a study in Punjab, Pakistan

This upload contains the SLURM batch jobs scripts that were used to analyse WGS data from CLED plate sweeps from a study conducted in Punjab, Pakistan.

About

Version history

v0.1.1 (current version)

  • Added reference to the study.

v0.1.0

  • Added brief description with a few missing parts.

Distribution

These files are made available under a CC-BY 4.0 license.

Citation

Khawaja, T., Mäklin, T., Kallonen, T. et al. Deep sequencing of Escherichia coli exposes colonisation diversity and impact of antibiotics in Punjab, Pakistan. Nature Communications 15, 5196 (2024). https://doi.org/10.1038/s41467-024-49591-5

Contact

Tommi Mäklin <tommi'at'maklin.fi>.

Files

Files (190.7 kB)

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Additional details

Related works

Is part of
Journal article: 10.1038/s41467-024-49591-5 (DOI)

References

  • Khawaja, T., Mäklin, T., Kallonen, T. et al. Deep sequencing of Escherichia coli exposes colonisation diversity and impact of antibiotics in Punjab, Pakistan. Nature Communications 15, 5196 (2024). https://doi.org/10.1038/s41467-024-49591-5