Phylogenomic analysis of cell-surface receptors and downstream signaling components in the plant lineage

Here we identified cell-surface receptors and downstream signaling components from the genomes of 350 plant species. 

Zip file contains:

Folder 'seqeunces for downstream signaling components' - FASTA and TREE files of the identified downstream signaling components.

Folder 'sequences for cell-surface receptors' - FASTA and TREE files of the identified cell-surface receptors.

Folder 'Specific analysis' - Contains specific analysis for the identified cell-surface receptors.

Subfolder 'ID analysis' - Contains information on ID clusters and motifs analysis in IDs.

Subfolder 'LRR motif gap analysis' - Contains information on small (10-29 aa) and large (30-90) gaps between LRR motifs in RLPs and RLKs.

Subfolder 'LRR-RLK & LRR-RLP phylogenetic analysis' - Contains FASTA and TREE files of the specific domain/regions (C3, C3-F, eJM-TM-cJM, and all) in LRR-RLPs and LRR-RLKs. This subfolder also contains the specific amino acid, charge and motif analysis in this region (see C3F-end features.xlsx).

Protein counts per species file - Contains the total number of each protein family/subfamily in each of the 350 species.

simpleToFullNames (translator file)- Translator file for the original ID of each gene.