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Published October 28, 2023 | Version v0.1.4
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Bias factorized, base-resolution deep learning models of chromatin accessibility reveal cis-regulatory sequence syntax, transcription factor footprints and regulatory variants.

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Description

  • (MAJOR) Bug in chrombpnet modisco_motifs command. seqlets was limited to 50000. If users wanted to change it to 1 million this did not happen.
  • Filter peaks at edges for pred_bw command and bias pipleline. So bias evaluation now done on these filtered peaks.
  • Preprocessing deafulted to use unix sort. Provided option to switch to bedtools sort.
  • Provided option to use filter chromosomes option in preprocessing.

Full Changelog: https://github.com/kundajelab/chrombpnet/compare/v0.1.3...v0.1.4

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Files

kundajelab/chrombpnet-v0.1.4.zip

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md5:2a617c3eddb05dd0bc9be5104f4cd19a
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Additional details

Related works

Is supplement to
Software: https://github.com/kundajelab/chrombpnet/tree/v0.1.4 (URL)