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Published October 27, 2023 | Version v0.8.4
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pyrates-neuroscience/PyCoBi: v0.8.4: Improved variable name tracking

Authors/Creators

  • 1. Northwestern University

Description

  • updated readthedocs configuration
  • updates to ODESystem.extract and the plotting functions that use it: Users can now flexibly switch between using the parameter/variable indices when specifying the variables to plot, or whether they want to use the pyrates-style naming scheme
  • added option to ODESystem.run to store only the minimum and maximum of each selected state variable for periodic solutions (set keyword argument reduce_limit_cycle=True)
  • debugged scenario where initial condition was run, but not explicitly labeled, which caused issues with extracting starting points from the solution branch
  • debugged issue with selecting specific variables and parameters that should be saved in the continuation summary
  • added private method ODESystem._map_var that ensures stable mapping between user-provided variable names and intrinsic variable names

Files

pyrates-neuroscience/PyCoBi-v0.8.4.zip

Files (546.1 kB)

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Additional details

Related works

Is supplement to
Software: https://github.com/pyrates-neuroscience/PyCoBi/tree/v0.8.4 (URL)