Spatial transcriptome mapping of the desmoplastic growth pattern of colorectal liver metastases by in situ sequencing - Image and In SItu Sequencing data

Image and ISS data for Spatial transcriptome mapping of the desmoplastic growth pattern of colorectal liver metastases by in situ sequencing reveals a biologically relevant zonation of the desmoplastic rim.

Image data consists of:

• Nucler stain (DAPI)
• Masks for liver, rim and tumor regions
• H&E images of parallel tissue sections

Gene and cluster marker data is collected in the markers.h5ad file which can be read using AnnData (https://anndata.readthedocs.io/en/latest/).