nf-core/cutandrun: nf-core/cutandrun v3.2.1 Mercury Turkey
Authors/Creators
- 1. The Francis Crick Institute
- 2. Seqera Labs
- 3. oNKo-innate, Monash University
- 4. Bit.Bio
- 5. @HPCBio @h3abionet @OBF @IGBIllinois @bioperl
- 6. @seqeralabs
- 7. University of Rostock
- 8. Robert Bosch GmbH
Description
[3.2.1] - 2023-10-22
Enhancements
- Updated pipeline template to nf-core/tools
2.10.
Fixes
- Fixed error that caused one random sample to run for markduplicates with certain versions of NextFlow. Adding an explicit
collect()on genome files has fixed this issue.
Software dependencies
Note, since the pipeline is now using Nextflow DSL2, each process will be run with its own Biocontainer. This means that on occasion it is entirely possible for the pipeline to be using different versions of the same tool. However, the overall software dependency changes compared to the last release have been listed below for reference.
| Dependency | Old version | New version |
| ---------- | ----------- | ----------- |
| fastqc | 11.9 | 12.1 |
| picard | 3.0.0 | 3.1.0 |
| multiqc | 1.15 | 1.17 |
NB: Dependency has been updated if both old and new version information is present. NB: Dependency has been added if just the new version information is present. NB: Dependency has been removed if version information isn't present.
Files
nf-core/cutandrun-3.2.1.zip
Files
(6.0 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:2d9231e8a7ca990cf088eb809b267e6f
|
6.0 MB | Preview Download |
Additional details
Related works
- Is supplement to
- Software: https://github.com/nf-core/cutandrun/tree/3.2.1 (URL)