SABS-R3-Epidemiology/epiabm: Interventions and Spatial Transmission

Complete implementation of both pharmaceutical and non-pharmaceutical interventions, completed by the SABS cohort 2022. Spatial transmission models have been updated with new sampling procedures, and profile of cell-wise sampling in infection sweeps has resulted in significant performance increases.

What's Changed

• Care homes by @laraherriott in https://github.com/SABS-R3-Epidemiology/epiabm/pull/162
• Interventions setup by @jiayuanz3 in https://github.com/SABS-R3-Epidemiology/epiabm/pull/173
• Vaccination by @laraherriott in https://github.com/SABS-R3-Epidemiology/epiabm/pull/180
• Disease testing by @laraherriott in https://github.com/SABS-R3-Epidemiology/epiabm/pull/193
• Functional testing class by @KCGallagher in https://github.com/SABS-R3-Epidemiology/epiabm/pull/199
• Travel interventions by @HenrietteCapel in https://github.com/SABS-R3-Epidemiology/epiabm/pull/209
• NZ simulation params by @jiayuanz3 in https://github.com/SABS-R3-Epidemiology/epiabm/pull/232
• Rt inference by @laraherriott in https://github.com/SABS-R3-Epidemiology/epiabm/pull/239

New Contributors

• @njs59 made their first contribution in https://github.com/SABS-R3-Epidemiology/epiabm/pull/167
• @laraherriott made their first contribution in https://github.com/SABS-R3-Epidemiology/epiabm/pull/162
• @jiayuanz3 made their first contribution in https://github.com/SABS-R3-Epidemiology/epiabm/pull/173
• @HenrietteCapel made their first contribution in https://github.com/SABS-R3-Epidemiology/epiabm/pull/190
• @Ellmen made their first contribution in https://github.com/SABS-R3-Epidemiology/epiabm/pull/195

Full Changelog: https://github.com/SABS-R3-Epidemiology/epiabm/compare/v1.0.1...v1.1.0