Published October 15, 2023
| Version v1
Dataset
Open
Cytomulate: accurate and efficient simulation of cytof data
Creators
-
1.
Southern Methodist University
-
2.
The University of Texas Southwestern Medical Center
-
3.
The University of Texas at Arlington
Contributors
Researchers:
Supervisors:
-
1.
Southern Methodist University
-
2.
The University of Texas Southwestern Medical Center
-
3.
The University of Texas at Arlington
Description
All six datasets and analysis code for reproducing the findings of "Cytomulate: accurate and efficient simulation of cytof data". The analysis code is also available at https://github.com/kevin931/cytomulate/releases/tag/benchmark.rev.1. The Cytomulate Python software can be found at https://github.com/kevin931/cytomulate.
Notes
Notes:
- We only used a subset of the original published datasets. Specifically, if multiple samples are contained in a dataset, we only used the first sample.
- All data have been bead-normalized and transformed by arcsinh function with a co-factor of 5.
- Please cite the original publications (found below) if you are to use these datasets.
Other
Information on references:
- Levine_13dim and Levine_32dim:10.1016/j.cell.2015.05.047
- Samusik:10.1038/nmeth.3863
- CyAnno:10.1093/bioinformatics/btab409
- Covid:10.1038/s41467-023-37478-w
- LG:10.1371/journal.pone.0179385
Files
analysis_code.zip
Files
(169.0 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:a3cde7b19fc7bd10de17e874f882f25a
|
52.8 kB | Preview Download |
|
md5:e1a44d3f119b73986b5e314d1ad9c93c
|
169.0 MB | Preview Download |
Additional details
References
- Cytomulate: Accurate and Efficient Simulation of CyTOF data Yuqiu Yang, Kaiwen Wang, Zeyu Lu, Tao Wang, Xinlei Wang bioRxiv 2022.06.14.496200; doi: https://doi.org/10.1101/2022.06.14.496200