Published October 15, 2023 | Version v1
Dataset Open

Cytomulate: accurate and efficient simulation of cytof data

  • 1. ROR icon Southern Methodist University
  • 2. ROR icon The University of Texas Southwestern Medical Center
  • 3. ROR icon The University of Texas at Arlington
  • 1. ROR icon Southern Methodist University
  • 2. ROR icon The University of Texas Southwestern Medical Center
  • 3. ROR icon The University of Texas at Arlington

Description

All six datasets and analysis code for reproducing the findings of "Cytomulate: accurate and efficient simulation of cytof data". The analysis code is also available at https://github.com/kevin931/cytomulate/releases/tag/benchmark.rev.1. The Cytomulate Python software can be found at https://github.com/kevin931/cytomulate

Notes

Notes:

  • We only used a subset of the original published datasets. Specifically, if multiple samples are contained in a dataset, we only used the first sample.
  • All data have been bead-normalized and transformed by arcsinh function with a co-factor of 5.
  • Please cite the original publications (found below) if you are to use these datasets.

Other

Information on references: 

Files

analysis_code.zip

Files (169.0 MB)

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md5:a3cde7b19fc7bd10de17e874f882f25a
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Additional details

References