Published October 20, 2023
| Version v3.0.0
Software
Open
Palmer Lab Heterogeneous Stock Rats Genotyping Pipeline
Description
The third version of Palmer Lab's HS Rats Genotyping Pipeline v3.0.0. Acceptable sequencing data: Riptide library prep lc-WGS, and ddGBS sequences Genotype calling and imputation: STITCH niteration=2 with a high quality consensus reference panel Variants filtering: Keep high confident SNPs based on INFO score, and discard some identified BAD SNPs positions
Other
If you use this pipeline or use data generated by this pipeline, please cite it as below.Files
Palmer-Lab-UCSD/HS-Rats-Genotyping-Pipeline-v3.0.0.zip
Files
(2.0 MB)
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md5:381755cfccf7670eaaef60f77fef43fc
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Additional details
Related works
- Is supplement to
- Software: https://github.com/Palmer-Lab-UCSD/HS-Rats-Genotyping-Pipeline/tree/v3.0.0 (URL)