Published September 10, 2017
| Version 0.5.0
Software
Open
amkozlov/raxml-ng: RAxML-NG v0.5.0 BETA
Description
CRITICAL BUGFIX:
- bootstrap support values were consistently underestimated if and only if
--all
command was used with--bs-trees
greater tha 250. Many thanks to Fabricia Nascimento for spotting and reporting this bug!
New features/enhancements:
--support
command: bootstrap mapping aka computing BS support values using an existing set of bootstrap trees from a newick file (similar to-f b
option in old RAxML)- site repeats optimization technique as described in (Kobert et al. 2016). This feature is still experimental and disabled by default; it can be enabled with
--site-repeats on
switch. - faster AVX2 kernels for protein data (5%-20% speedup)
- automatically enable per-rate scalers on very large alignments (>2000 taxa) to prevent numerical underflow
Files
amkozlov/raxml-ng-0.5.0.zip
Files
(95.0 kB)
Name | Size | Download all |
---|---|---|
md5:74e8d93d9a0117b50d69da9def5c18e2
|
95.0 kB | Preview Download |
Additional details
Related works
- Is supplement to
- https://github.com/amkozlov/raxml-ng/tree/0.5.0 (URL)