SMRT PacBio Sequel sequencing of 12 Silene herbarium specimens
Creators
- 1. University of Gothenburg
- 2. Alzahra University
- 3. Royal Botanic Garden of Edinburgh
- 4. Natural History Museum, University of Oslo
Description
The folder includes reads sequenced with SMRT PacBio Sequel from twelve Silene herbarium specimens. Both demultiplexed and non demultiplexed reads are included. The demultiplexed reads are in folder called "demultiplexed.zip", in files starting with "Barcodenumber_speciesnamesamplingyear.fastq". The barcode number and sequence can be found below, in the description. The non demultiplexed reads are in file called "ps_248_001.ccsreads.fastq.gz".
#NebNext Barcodes
#Adapter('Barcode 1 (forward)',
# start_sequence=('BC01', 'CGTGAT'),
# end_sequence=('BC01_rev', 'ATCACG')),
#Adapter('Barcode 2 (forward)',
# start_sequence=('BC02', 'ACATCG'),
# end_sequence=('BC02_rev', 'CGATGT')),
#Adapter('Barcode 3 (forward)',
# start_sequence=('BC03', 'GCCTAA'),
# end_sequence=('BC03_rev', 'TTAGGC')),
#Adapter('Barcode 4 (forward)',
# start_sequence=('BC04', 'TGGTCA'),
# end_sequence=('BC04_rev', 'TGACCA')),
#Adapter('Barcode 5 (forward)',
# start_sequence=('BC05', 'CACTGT'),
# end_sequence=('BC05_rev', 'ACAGTG')),
#Adapter('Barcode 6 (forward)',
# start_sequence=('BC06', 'ATTGGC'),
# end_sequence=('BC06_rev', 'GCCAAT')),
#Adapter('Barcode 7 (forward)',
# start_sequence=('BC07', 'GATCTG'),
# end_sequence=('BC07_rev', 'CAGATC')),
#Adapter('Barcode 8 (forward)',
# start_sequence=('BC08', 'TCAAGT'),
# end_sequence=('BC08_rev', 'ACTTGA')),
#Adapter('Barcode 9 (forward)',
# start_sequence=('BC09', 'CTGATC'),
# end_sequence=('BC09_rev', 'GATCAG')),
#Adapter('Barcode 10 (forward)',
# start_sequence=('BC10', 'AAGCTA'),
# end_sequence=('BC10_rev', 'TAGCTT')),
#Adapter('Barcode 11 (forward)',
# start_sequence=('BC11', 'GTAGCC'),
# end_sequence=('BC11_rev', 'GGCTAC')),
#Adapter('Barcode 12 (forward)',
# start_sequence=('BC12', 'TACAAG'),
# end_sequence=('BC12_rev', 'CTTGTA')),]
Files
demultiplexed.zip
Files
(433.4 MB)
Name | Size | Download all |
---|---|---|
md5:3f1cc29c3338618e56df8d733d69ed6e
|
190 Bytes | Preview Download |
md5:fd43650b606de81b5d9f8e5703ca928d
|
433.4 MB | Download |