Published October 3, 2023
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Introducing Nigrograna italica sp. nov. (Nigrogranaceae) from Corylus avellana and Valsaria tectonae sp. nov. (Valsariaceae) from Tectona grandis
- 1. Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand & digvi221993@gmail.com; https://orcid.org/0000-0002-0790-215X
- 2. Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand & Kyung Hee University, 26 Kyungheedae-ro, Dongdaemun-gu, Seoul 02447, South Korea & ruvishika.jay@mfu.ac.th; https://orcid.org/0000-0001-7702-4885
- 3. Gruppo Micologico Forlivese "Antonio Cicognani", Via Roma 18, Forli, Italy & A.M.B, Circolo Micologico "Giovanni carini", C.P. 314, Brescia, Italy & eriocamporesi@libero.it; https://orcid.org/0000-0002-2801-9462
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Bundhun, Digvijayini, Jayawardena, Ruvishika S., Camporesi, Erio (2023): Introducing Nigrograna italica sp. nov. (Nigrogranaceae) from Corylus avellana and Valsaria tectonae sp. nov. (Valsariaceae) from Tectona grandis. Phytotaxa 618 (2): 103-119, DOI: 10.11646/phytotaxa.618.2.1, URL: http://dx.doi.org/10.11646/phytotaxa.618.2.1
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References
- Ahmed, S.A., van de Sande, W.W.J., Stevens, D.A., Fahal, A., van Diepeningen, A.D., Menken, S.B.J. & de Hoog, G.S. (2014) Revision of agents of black-grain eumycetoma in the order Pleosporales. Persoonia 33: 141-154. https://doi.org/10.3767/003158514X684744
- Boonmee, S., Wanasinghe, D.N., Calabon, M.S., Huanraluek, N., Chandrasiri, S.K.U., Jones, G.E.B., Rossi, W., Leonardi, M., Singh, S.K., Rana, S., Singh, P.N., Maurya, D.K., Lagashetti, A.C., Choudhary, D., Dai, Y.-C., Zhao, C.-L., Mu, Y.-H., Yuan, H.-S., He, S.-H., Phookamsak, R., Jiang, H.-B., Martin, M.P., Duenas, M., Telleria, M.T., Kalucka, I.L., Jagodzinski, A.M., Liimatainen, K., Pereira, D.S., Phillips, A.J.L., Suwannarach, N., Kumla, J., Khuna, S., Lumyong, S., Potter, T.B., Shivas, R.G., Sparks, A.H., Vaghefi, N., Abdel-Wahab, M.A., Abdel-Aziz, F.A., Li, G.-J., Lin, W.-F., Singh, U., Bhatt, R.P., Lee, H.B., Nguyen, T.T.T., Kirk, P.M., Dutta, A.K., Acharya, K., Sarma, V.V., Niranjan, M., Rajeshkumar, K.C., Ashtekar, N., Lad, S., Wijayawardene, N.N., Bhat, D.J., Xu, R.-J., Wijesinghe, S.N., Shen, H.-W., Luo, Z.-L., Zhang, J.-Y., Sysouphanthong, P., Thongklang, N., Bao, D.-F., Aluthmuhandiram, J.V.S., Abdollahzadeh, J., Javadi, A., Dovana, F., Usman, M., Khalid, A.N., Dissanayake, A.J., Telagathoti, A., Probst, M., Peintner, U., Garrido-Benavent, I., Bona, L., Merenyi, Z., Boros, L., Zoltan, B., Stielow, J.B., Jiang, N., Tian, C.-M., Shams, E., Dehghanizadeh, F., Pordel, A., Javan-Nikkhah, M., Denchev, T.T., Denchev, C.M., Kemler, M., Begerow, D., Deng, C.-Y., Harrower, E., Bozorov, T., Kholmuradova, T., Gafforov, Y., Abdurazakov, A., Xu, J.-C., Mortimer, P.E., Ren, G.-C., Jeewon, R., Maharachchikumbura, S.S.N., Phukhamsakda, C., Mapook, A. & Hyde, K.D. (2021) Fungal diversity notes 1387-1511: taxonomic and phylogenetic contributions on genera and species of fungal taxa. Fungal Diversity 111: 1-335. https://doi.org/10.1007/s13225-021-00489-3
- Bruen, T.C., Philippe, H. & Bryant, D. (2006) A simple and robust statistical test for detecting the presence of recombination. Genetics 172: 2665-2681. https://doi.org/10.1534/genetics.105.048975
- Carbone, I. & Kohn, L.M. (1999) A method for designing primer sets for speciation studies in filamentous ascomycetes. Mycologia 91: 553-556. https://doi.org/10.1080/00275514.1999.12061051
- Chethana, K.T., Manawasinghe, I.S., Hurdeal, V.G., Bhunjun, C.S., Appadoo, M.A., Gentekaki, E., Raspe, O., Promputtha, I. & Hyde, K.D. (2021) What are fungal species and how to delineate them?. Fungal Diversity 109: 1-25. https://doi.org/10.1007/s13225-021-00483-9
- Dayarathne, M.C., Jones, E.B.G., Maharachchikumbura, S.S.N., Devadatha, B., Sarma, V.V., Khongphinitbunjong, K., Chomnunti, P. & Hyde, K.D. (2020) Morpho-molecular characterization of microfungi associated with marine based habitats. Mycosphere 11: 1-188. https://doi.org/10.5943/mycosphere/11/1/1
- de Gruyter, J., Woudenberg, J.H., Aveskamp, M.M., Verkley, G.J., Groenewald, J.Z. & Crous, P.W. (2013) Redisposition of phoma-like anamorphs in Pleosporales. Studies in Mycology 75: 1-36. https://doi.org/10.3114/sim0004
- Doilom, M., Dissanayake, A.J., Wanasinghe, D.N., Boonmee, S., Liu, J.-K., Bhat, J.D., Taylor, J.E., Bahkali, A.H., McKenzie, E.H.C. & Hyde, K.D. (2017) Microfungi on Tectona grandis (teak) in Northern Thailand. Fungal Diversity 82: 107-182. https://doi.org/10.1007/s13225-016-0368-7
- Dong, W., Wang, B., Hyde, K.D., McKenzie, E.H.C., Bhat, D.J., Raja, H.A., Tanaka, K., Abdel-Wahab, M.A., Abdel-Aziz, F.A., Doilom, M., Phookamsak, R., Hongsanan, S., Wanasinghe, D.N., Yu, X.-D., Wang, G.-N., Yang, H., Yang, J., Thambugala, K.M., Tian, Q., Luo, Z.-L., Yang, J.-B., Miller, A.N., Fournier, J., Boonmee, S., Hu, D.-M., Nalumpang, S. & Zhang, H. (2020) Freshwater Dothideomycetes. Fungal Diversity 105: 319-575. https://doi.org/10.1007/s13225-020-00463-5
- Hall, T. (2004) BioEdit version 5.0.6. Available from: http://www.mbio.ncsu.edu/BioEdit/bioedit.html/ (accessed 10 May 2023)
- Hongsanan, S., Hyde, K.D., Phookamsak, R., Wanasinghe, D.N., McKenzie, E.H.C., Sarma, V.V., Lucking, R., Boonmee, S., Bhat, D.J., Liu, N.-G., Tennakoon, D.S., Pem, D., Karunarathna, A., Jiang, S.-H., Jones, E.B.G., Phillips, A.J.L., Manawasinghe, I.S., Tibpromma, S., Jayasiri, S.C., Sandamali, D.S., Jayawardena, R.S., Wijayawardene, N.N., Ekanayaka, A.H., Jeewon, R., Lu, Y.- Z., Phukhamsakda, C., Dissanayake, A.J., Zeng, X.-Y., Luo, Z.-L., Tian, Q., Thambugala, K.M., Dai, D.-Q., Samarakoon, M.C., Chethana, K.W.T., Ertz, D., Doilom, M., Liu, J.-K., Perez-Ortega, S., Suija, A., Senwanna, C., Wijesinghe, S.N., Niranjan, M., Zhang, S.-N., Ariyawansa, H.A., Jiang, H.-B., Zhang, J.-F., Norphanphoun, C., de Silva, N.I., Thiyagaraja, V., Zhang, H., Bezerra, J.P.D., Miranda-Gonzalez, R., Aptroot, A., Kashiwadani, H., Harishchandra, D., Serusiaux, E., Abeywickrama, P.D., Bao, D.-F., Devadatha, B., Wu, H.-X., Moon, K.H., Gueidan, C., Schumm, F., Bundhun, D., Mapook, A., Monkai, J., Bhunjun, C.S., Chomnunti, P., Suetrong, S., Chaiwan, N., Dayarathne, M.C., Yang, J., Rathnayaka, A.R., Xu, J.-C., Zheng, J., Liu, G., Feng, Y. & Xie, N. (2020) Refined families of Dothideomycetes: orders and families incertae sedis in Dothideomycetes. Fungal Diversity 105: 17-318. https://doi.org/10.1007/s13225-020-00462-6
- Huelsenbeck, J.P. & Ronquist, F. (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755. https://doi.org/10.1093/bioinformatics/17.8.754
- Huson, D.H., Kloepper, T. & Bryant, D. (2008) SplitsTree 4.0-Computation of phylogenetic trees and networks. Bioinformatics 14: 68-73.
- Jaklitsch, W.M. & Voglmayr, H. (2016) Hidden diversity in Thyridaria and a new circumscription of the Thyridariaceae. Studies in Mycology 85: 35-64. https://doi.org/10.1016/j.simyco.2016.09.002
- Jaklitsch, W.M., Fournier, J., Dai, D.-Q., Hyde, K.D. & Voglmayr, H. (2015) Valsaria and the Valsariales. Fungal Diversity 73: 159-202. https://doi.org/10.1007/s13225-015-0330-0
- Ju, Y.-M., Rogers, J.D. & Huhndorf, S.M. (1996) Valsaria and notes on Endoxylina, Pseudothyridaria, Pseudovalsaria, and Roussoella. Mycotaxon 58: 419-481.
- Katoh, K., Rozewicki, J. & Yamada, K.D. (2019) MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization. Briefings in Bioinformatics 20: 1160-1166. https://doi.org/10.1093/bib/bbx108
- Kirk, P.M., Cannon, P.F., Minter, D.W. & Stalpers, J.A. (2008) Ainsworth & Bisby's dictionary of the fungi. 10th. CABI; Wallingford.
- Liu, Y.-J., Whelen, S. & Hall, B.D. (1999) Phylogenetic relationships among ascomycetes: Evidence from an RNA polymerse II subunit. Molecular Biology and Evolution 16: 1799-1808. https://doi.org/10.1093/oxfordjournals.molbev.a026092
- Lu, L., Karunarathna, S.C., Dai, D.-Q., Jayawardena, R.S., Suwannarach, N. & Tibpromma, S. (2022) Three new species of Nigrograna (Dothideomycetes, Pleosporales) associated with Arabica coffee from Yunnan Province, China. MycoKeys 94: 51-71. https://doi.org/10.3897/mycokeys.94.95751
- Mapook, A., Hyde, K.D., McKenzie, E.H.C., Jones, E.B.G., Bhat, J.D., Jeewon, R., Stadler, M., Samarakoon, M.C., Malaithong, M., Tanunchai, B., Buscot, F., Wubet, T. & Purahong, W. (2020) Taxonomic and phylogenetic contributions to fungi associated with the invasive weed Chromolaena odorata (Siam weed). Fungal Diversity 101: 1-175. https://doi.org/10.1007/s13225-020-00444-8
- Miller, M.A., Pfeiffer, W. & Schwartz, T. (2010) Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In: 2010 Gateway Computing Environments Workshop (GCE). Ieee, pp. 1-8. https://doi.org/10.1109/GCE.2010.5676129
- Nylander, J.A.A. (2004) MrModeltest v2. Program distributed by the author. Evolutionary Biology Centre, Uppsala, Sweden.
- Pem, D., Hyde, K.D., Doilom, M., Camporesi, E., Hongsanan, S., Rampadarath, S., Bhoyroo, V.& Jeewon, R. (2019) Multigene phylogenetic analyses to establish new Valsaria species and taxonomic significance of spore ornamentation. PLoS ONE 14: e0217982. https://doi.org/10.1371/journal.pone.0217982
- Pem, D., Jeewon, R., Chethana, K.W., Hongsanan, S., Doilom, M., Suwannarach, N. & Hyde, K.D. (2021) Species concepts of Dothideomycetes: Classification, phylogenetic inconsistencies and taxonomic standardization. Fungal Diversity 109: 283-319. https://doi.org/10.1007/s13225-021-00485-7
- Phukhamsakda, C., McKenzie, E.H., Phillips, A.J., Gareth, J.E.B., Bhat, J.D., Stadler, M., Bhunjun, C.S., Wanasinghe, D.N., Thongbai, B., Camporesi, E., Ertz, D., Jayawardena, R.S., Perera, R.H., Ekanayake, A.H., Tibpromma, S., Doilom, M., Xu, J. & Hyde, K.D. (2020) Microfungi associated with Clematis (Ranunculaceae) with an integrated approach to delimiting species boundaries. Fungal Diversity 102: 1-203. https://doi.org/10.1007/s13225-020-00448-4
- Rambaut, A. (2012) FigTree v. 1.4.0. Available from: http://tree.bio.ed.ac.uk/software/figtree/ (accessed 15 May 2023)
- Rayner, R.W. (1970) A mycological colour chart. Commonwealth Mycological Institute, Kew, Surrey.
- Senanayake, I.C., Rathnayaka, A.R., Marasinghe, D.S., Calabon, M.S., Gentekaki, E., Lee, H.B., Hurdeal, V.G., Pem, D., Dissanayake, L.S., Wijesinghe, S.N., Bundhun, D., Nguyen, T.T., Goonasekara, I.D., Abeywickrama, P.D., Bhunjun, C.S., Jayawardena, R.S., Wanasinghe, D.N., Jeewon, R., Bhat, D.J. & Xiang, M.-M. (2020) Morphological approaches in studying fungi: Collection, examination, isolation, sporulation and preservation. Mycosphere 11: 2678-2754. https://doi.org/10.5943/mycosphere/11/1/20
- Shu, Y.-X., Cheng, R.-L., Huang, J.-L., Li, K.-L., Zhao, S.-Z., Zhao, H.-J., Dong, W., Dong, Z.-Y., Doilom, M. & Xu, B. (2023) Introducing Nigrograna wuhanensis sp. nov. (Nigrogranaceae, Pleosporales) from Camellia japonica in China. Chiang Mai Journal of Science 50: 1-11. https://doi.org/10.12982/CMJS.2023.025
- Stamatakis, A. (2014) RAxML Version 8: A tool for phylogenetic analysis and postanalysis of large phylogenies. Bioinformatics 30: 1312-1313. https://doi.org/10.1093/bioinformatics/btu033
- Sung, G.-H., Sung, J.-M., Hywel-Jones, N.L. & Spatafora, J.W. (2007) A multi-gene phylogeny of Clavicipitaceae (Ascomycota, Fungi): Identification of localized incongruence using a combinational bootstrap approach. Molecular Phylogenetics and Evolution 44: 1204-1223. https://doi.org/10.1016/j.ympev.2007.03.011
- Swofford, D.L. (2003) PAUP* 4.0b10: phylogenetic analysis using parsimony (*and other methods). Sinauer Associates, Sunderland, Massachusetts.
- Taylor, J.W., Jacobson, D.J., Kroken, S., Kasuga, T., Geiser, D.M., Hibbett, D.S. & Fisher, M.C. (2000) Phylogenetic species recognition and species concepts in fungi. Fungal Genetics and Biology 31: 21-32. https://doi.org/10.1006/fgbi.2000.1228
- Tibpromma, S., Hyde, K.D., Jeewon, R., Maharachchikumbura, S.S.N., Liu, J.-K., Bhat, D.J., Jones, E.B.G., McKenzie, E.H.C., Camporesi, E., Bulgakov, T.S., Doilom, M., De Azevedo Santiago, A.L.C.M., Das, K., Manimohan, P., Gibertoni, T.B., Lim, Y.W., Ekanayaka, A.H., Thongbai, B., Lee, H.B., Yang, J.-B., Kirk, P.M., Sysouphanthong, P., Singh, S.K., Boonmee, S., Dong,W., Raj, K.N.A., Latha, K.P.D., Phookamsak, R., Phukhamsakda, C., Konta, S., Jayasiri, S.C., Norphanphoun, C.,, Tennakoon, D.S., Li, J., Dayarathne, M.C., Perera, R.H., Xiao, Y., Wanasinghe, D.N., Senanayake, I.C., Goonasekara, I.D., de Silva, N.I., Mapook, A., Jayawardena, R.S., Dissanayake, A.J., Manawasinghe, I.S., Chethana, K.W.T., Luo, Z.-L., Hapuarachchi, K.K., Baghela, A., Soares, A.M., Vizzini, A., Meiras-Ottoni, A., Mesic, A., Dutta, A.K., de Souza, C.A.F., Richter, C., Lin, C.-G., Chakrabarty, D., Daranagama, D.A., Lima, D.X., Chakraborty, D., Ercole, E., Wu, F., Simonini, G., Vasquez, G., da Silva, G.A., Plautz Jr, H.L., Ariyawansa, H.A., Lee, H., Kusan, I., Song, J., Sun, J., Karmakar, J., Hu, K., Semwal, K.C., Thambugala, K.M., Voigt, K., Acharya, K., Rajeshkumar, K.C., Ryvarden, L., Jadan, M., Hosen, M.I., Miksik, M., Samarakoon, M.C., Wijayawardene, N.N., Kim, N.K., Matocec, N., Singh, P.N., Tian, Q., Bhatt, R.P., de Oliveira, R.J.V., Tulloss, R.E., Aamir, S., Kaewchai, S., Marathe, S.D., Khan, S., Hongsanan, S., Adhikari, S., Mehmood, T., Bandyopadhyay, T.K., Svetasheva, T.Y., Nguyen, T.T.T., Antonin, V., Li, W.-J., Wang, Y., Indoliya, Y., Tkalcec, Z., Elgorban, A.M., Bahkali, A.H., Tang, A.M.C., Su, H.-Y., Zhang, H., Promputtha, I., Luangsa-Ard, J., Xu, J., Yan, J., Kang, J.-C., Stadler, M., Mortimer, P.E., Chomnunti, P., Zhao, Q., Phillips, A.J.L., Nontachaiyapoom, S., Wen, T.-C. & Karunarathna, S.C. (2017) Fungal diversity notes 491-602: taxonomic and phylogenetic contributions to fungal taxa. Fungal Diversity 83: 1-261. https://doi.org/10.1007/s13225-017-0378-0
- Vilgalys, R. & Hester, M. (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172: 4238-4246. https://doi.org/10.1128/jb.172.8.4238-4246.1990
- White, T.J., Bruns, T., Lee, S. & Taylor, J. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis, M.A., Gelfand, D.H., Sninsky, J.J. & White, T.J. (Eds.) PCR protocols: a guide to methods and applications. Academic, New York, pp. 315-322. https://doi.org/10.1016/B978-0-12-372180-8.50042-1
- Zezlina, I., Rot, M., Kac, M. & Trdan, S. (2016) Causal agents of stone fruit diseases in Slovenia and the potential for diminishing their economic impact-a review. Plant Protection Science 52: 149-157. https://doi.org/10.17221/58/2015-PPS
- Zhang, J.-F., Liu, J.-K., Thambugala, K.M., Yang, J., Meng, Z.-H. & Liu, Z.-Y. (2020) Two new species and a new record of Nigrograna (Nigrogranaceae, Pleosporales) from China and Thailand. Mycological Progress 19: 1365-1375. https://doi.org/10.1007/s11557-020-01633-0
- Zhaxybayeva, O. & Gogarten, J.P. (2002) Bootstrap, Bayesian probability and maximum likelihood mapping: exploring new tools for comparative genome analyses. BMC Genomics 3: 4. https://doi.org/10.1186/1471-2164-3-4